Query= MSMg01no089_l03.b1 MSMg01no089_l03.b1 CHROMAT_FILE:
MSMg01no089_l03.b1 PHD_FILE: MSMg01no089_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:35 2005
(629 letters)
>mm_chr4_124914352_124915379
Length = 1028
Score = 1058 bits (547), Expect = 0.0
Identities = 599/625 (95%), Gaps = 15/625 (2%)
Strand = Plus / Minus
Query: 5 gaattctattccctcctaaacctccaatgtccctcccaggcccagcagtgggaacaagcc 64
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 747 gaatcctattccctcctaaacctccagtgtccctcccaggcccagcagtgggaacaagtc 688
Query: 65 agcatggaaaaagtggacagtgctattaactcagagcccaggatccccaccgtcagccac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agcatggaaaaagtggacagtgctattaactcagagcccaggatccccaccgtcagccac 628
Query: 125 agggacacatggactggggtagcagtacacaggattcctgttttatctaggcactcccaa 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agggacacatggact-gggtagcagtacacaggattcctgttttatctaggcactcccaa 569
Query: 185 tcttgagctgaggctgagatgacctctgtccctcccaggggctgccatacccagatgcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcttgagctgaggctgagatgacctctgtccctcccaggggctgccatacccagatgcta 509
Query: 245 caattcgtggcatacacagaattgtgcctgccgagggacacactctggaggaatcttggc 304
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caatttgtggcatacacagaattgtgcctgccgagggacacactctggaggaatcttggc 449
Query: 305 catggtctgcttagaaaagagggaagggctgataggaatatttctggacagaaaggcata 364
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 448 catggtctgcttagaaaagagggaagggctgataagaatatttctggacaaaaaggcata 389
Query: 365 gacgctgagttcagaggttcccatgctggaaggtcacgacctagtgttgtatccgatcta 424
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 388 gacgctgagttcagaggtttccatgctggaaggtcacgacctagtgttgtatcggatcta 329
Query: 425 ttacatgtcctgggtccttaagcctctgaattacagtctcctccgaggtagcataaggat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttacatgtcctgggtccttaagcctctgaattacagtctcctccgaggtagcataaggat 269
Query: 485 actgaagccctagtgccagagctggcatgatatgaaaattggaaaagccaaacatcacct 544
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 268 actgaagccctagtgccagagccggcatgatatgaaaatgggaaaagccaaacatcaccc 209
Query: 545 ctaaacacacacacacacacacacacacacacacacacacacacacacacacacacacac 604
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctaa--------------acacacacacacacacacacacacacacacacacacacacac 163
Query: 605 acacacctttagtccaaccaagctc 629
|||||||||||||||||||||||||
Sbjct: 162 acacacctttagtccaaccaagctc 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space: 630142
Effective search space used: 630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_l03.g1 MSMg01no089_l03.g1 CHROMAT_FILE:
MSMg01no089_l03.g1 PHD_FILE: MSMg01no089_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:35 2005
(465 letters)
>mm_chr4_124880023_124880886
Length = 864
Score = 832 bits (430), Expect = 0.0
Identities = 454/462 (98%), Gaps = 1/462 (0%)
Strand = Plus / Plus
Query: 4 tctccgtgaaagatcagtgcaaaggcagcctccacgacactgaaaaaaccgggtgccttc 63
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 tctccgtgaaagattagtgcaaaggcagcctccacgacactgtaaaaaccgggtgccttc 263
Query: 64 tgtgaaccagaaggcagtgggacacactgggcgctcaacgtcgtaaacaaaacagatagc 123
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct: 264 tgtgaaccagaaggcagtgggacacactgggcactcaacgtcataaacaaaaaagatagc 323
Query: 124 tgcccctgtgtgactcactgtctagttggggttcagaccagagtggagctgtggggggag 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 tgcccctgtgtgactcactgtctagttggggttcggaccagagtggagctgtggggggag 383
Query: 184 tagagtgaacagtgaatacaaaggtacagatgttaacactatgtgacaccctggtgggaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagagtgaacagtgaatacaaaggtacagatgttaacactatgtgacaccctggtgggaa 443
Query: 244 gggggcagtggactcctgctggaggttctgacgggcctctccaaggacaggacattgaat 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 gggggcagtggactcctgctggaggttccgacgggcctctccaaggacaggacattgaat 503
Query: 304 ttgaaaccagaggtcgagaggaggctgccctcaggagaacagggaggattcctctaggca 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ttgaaaccagaggtcgagaggaggctgcc-tcaggagaacagggaggattcctctaggca 562
Query: 364 ggtggctggagagagaaggcgcttactgcaactcaacaagggaaagtcagggtgattgga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggtggctggagagagaaggcgcttactgcaactcaacaagggaaagtcagggtgattgga 622
Query: 424 acaaaaattcatgagtcaaggagagtctggagatgtggggga 465
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acaaaaattcatgagtcaaggagagtctggagatgtggggga 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 864
Length adjustment: 10
Effective length of query: 455
Effective length of database: 854
Effective search space: 388570
Effective search space used: 388570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
