BAC Information

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BAC

Clone NameMSMg01-089O15
Chromosome4 (Build37)
Map Location 144,043,795 - 144,044,162
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik
Downstream geneAadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089O15.T7 (MSMg01no089_o15.b1)MSMg01-089O15.TJ (MSMg01no089_o15.g1)
ACCAG308284AG308285
length738774
length of high quality
(start - end)
383 (34 - 416)344 (133 - 476)
definitionCHROMAT_FILE: MSMg01no089_o15.b1 PHD_FILE: MSMg01no089_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:54 2005CHROMAT_FILE: MSMg01no089_o15.g1 PHD_FILE: MSMg01no089_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCTCATGGGTGGCTTCTTGAGCCATTCATAGTTATCCAGCAGATGAC
TTTAGTAGAAAAATAAGAACTAGCCACTGAAAACATATATTGTAGGAAGC
AATGGAACCCCAAGAGTATGGTCCTCTCTGATATAGGTCTCTGAGTTGAA
TTGAGTATGTCTTCAGCCTGGAGTGGGTTTTGTGTAATGATAGTACAGCT
ACTGGAGGCTGAAGAGGTATGGACTGACCTTCCACATAGATAGGTGCTTG
TCTCTTTGACTGGGAGGTGGTAAAACTGATACACTATTGGAAGACTGTGC
CTAGTGAAAATGACTGGGGACATCTCAGGGCTGATGGTGCATTTTCACAG
CTTTCCCTTCTGTAGACCCCCACTAGGACAAAGGACGTTTACCTTAGTAG
ATGGCTGGGGTCCCCAGGAGCATACCCGTATACCTTTCTGTTAATCAACT
CATTCCTATTATTCTTGCTAAATATTTCTTTTCATTCTACTCTACATGTG
CAGATAATTTACCCCTTTTGTTTTTTACCTGATTATCCCCACATCTCCCT
TTTTTTTCCCCTCTTGCTTCCCCTTTTCCCCTTATTTCCCTTTATTCGCC
TTCCCTTTCCCCCTTTAAAACGCGGGGCTGTTATTTTTTTCCGCCCCCTT
TTCCCTCTCTGCTATTTTTTTTTCCCCCCCCTCTTTTT
TTTTTTTTTTTTTTTTNTTTTTCCCCTGCTTTTTTCTTTCTCNNCCCCAT
CCNNNCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCT
TAACAGTCTGCTTTACGGGAACCTTTATCACCGCGACCCGCAGTTCTGGT
TCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCC
GGAATTCGGCACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAA
GAACACCACAGACCAAAATCTTCTGCGGCAAAGCTTTATTGCTTACATCT
TCAGGAGCAGGAGTGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTC
CCTATTAAGGAGAATTATCCTTCGCCTCGGACGTGTCACTCCCTGATTGG
CTGCAGCCCATCGGCCGAGTTGACGCCACGCGGAAGGCAGAGTACAAGTA
GTCACAAAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGA
ACACAGCTGTCAGCGCCATCTTGTACCGGCGAATGTGGGCGCGGCTCCCA
ACAGCTTGAGGGCCTCTTCAAGGAAGAATAAGACTGATCACAGCTGAATA
GTATAAATACTGTATGCTCAACACCAGTTCATACTTTCGTAAATCTTATT
TGCTCATGAAAGAATTCTTTTTCCATATTATTACCAACCTTTATTGCATA
GTGGAATCCCCTCAGACGTAAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_o15.b1 MSMg01no089_o15.b1 CHROMAT_FILE:
MSMg01no089_o15.b1 PHD_FILE: MSMg01no089_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:54 2005
         (383 letters)



>mm_chr4_144043580_144044362
          Length = 783

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattctcatgggtggcttcttgagccattcatagttatccagcagatgactttagtag 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggaattctcatgggtggcttcttgagccattcatagttatccagcagatgactttagtag 524

                                                                       
Query: 76  aaaaataagaactagccactgaaaacatatattgtaggaagcaatggaaccccaagagta 135
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 523 aaaaataagaactagccactgaaaacatgtattgtaggaagcaatggaaccccaagagta 464

                                                                       
Query: 136 tggtcctctctgatataggtctctgagttgaattgagtatgtcttcagcctggagtgggt 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tggtcctctctgatataggtctctgagttgaattgagtatgtcttcagcctggagtgggt 404

                                                                       
Query: 196 tttgtgtaatgatagtacagctactggaggctgaagaggtatggactgaccttccacata 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttgtgtaatgatagtacagctactggaggctgaagaggtatggactgaccttccacata 344

                                                                       
Query: 256 gataggtgcttgtctctttgactgggaggtggtaaaactgatacactattggaagactgt 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gataggtgcttgtctctttgactgggaggtggtaaaactgatacactattggaagactgt 284

                                                                       
Query: 316 gcctagtgaaaatgactggggacatctcagggctgatggtgcattttcacagctttccct 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gcctagtgaaaatgactggggacatctcagggctgatggtgcattttcacagctttccct 224

                   
Query: 376 tctgtaga 383
           ||||||||
Sbjct: 223 tctgtaga 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)