BAC Information

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BAC

Clone NameMSMg01-089P04
Chromosome4 (Build37)
Map Location 150,433,714 - 150,434,181
singlet/doubletsinglet
Overlap geneCamta1
Upstream geneGpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3
Downstream geneLOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089P04.T7 (MSMg01no089_p04.b1)MSMg01-089P04.TJ (MSMg01no089_p04.g1)
ACCAG308309AG308310
length669693
length of high quality
(start - end)
471 (21 - 491)326 (77 - 402)
definitionCHROMAT_FILE: MSMg01no089_p04.b1 PHD_FILE: MSMg01no089_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:56 2005CHROMAT_FILE: MSMg01no089_p04.g1 PHD_FILE: MSMg01no089_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATAGTTCAGAAATCCGCGGAATTCTAGGTGAGGTCTCAGCATACT
TCCACTGACACAAAGCATTTATGACCACCTTTTTTGATTGTAACTCTTAA
TTTTGAATATAAGGTGATAGGCGCAGCTTTCTTGGATAATCTGAATTCCC
AAGTGCCAGGAGTAGGATTTCATGATAAAATTAATAGCTAATCTTATTCT
GTCTCGTGAAGATTTAATTGCTATCCTTGTTACCCATTCAAAATCAGCTG
TACTGTGTGAATGAAATAAAGACATTAAGACGAACCCCTTTCTGGCTGCA
CGGTCGCTTATGGCAGTTCCACACAGTAGTTGGCGCCCAACGGGGGGTCC
CTGAGACTTGCATGTAAAACTAGTCTAGATGTCTCCTTTTTTGTAAGTTT
TATTTTTGTAATTGTGCATGTAAAGCATCATTGAGTCAATGGATCTGTTG
AAGAACTCAGCTGCTGGAAACCATGCAAAATGTTTTGAATTGCCCTTAAA
AATATGGAAAATGTTTTCTGAATGCTTTATATTCTTTCTGCTGTAAATTA
AAAATGAAGAAAATTTCCCCACATTATCTGTGTTTTGCTTTTAACTGATC
TGAAACCCAAGGCGTTGACAGCGAAGTCATAATTAGAACTGGGAAGAATA
ATTTTACTTTCCCCATGCN
CCCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTTCTTCATCTTTGTCTGCC
TTTTCTTATTTTTTTTCTGGGGGTAAGGGTGTGTGGACATTTAGGAAATA
GGAGGCCATATAGCCTAGGCTAGCCTTAAACCTGATCTATAATAAAGGAT
CATGTTGAATTCCTGATCCTCCTGCCTCCAGTTCCCAAGTGCTGGGGTTA
CATGTCAGTATCACCATTTCTGGTTTTTCTTTCTTTTTCTTTTCTTTTCT
TTTTAGCAAATTTGTTTGTTTTGTGACACAGAGAGTCAGGTTGCTGCCAG
GCTGGAACTGCCAGAATCAAGGAGCCTCAAGCCTTGGCTTCCCGAGCAGC
TGGGACTACAGACATGTCCCCAACTGTCAACCCCGTAAGTTCAGAAGTGA
CTTCTCTTGCCTTTGGACACTTGTTGTCTTGGTCTGTTTGTCCTCCCCCA
TCTCCCAGTCCACATGTGATGCCCCCCCCACCTCTCCGGATCGCCCATTT
CCTGGTTAACAGAGCTCAACTCCCCTTTACTTCCACTTATGAAACCTGAA
TTTAATTTTTAGCCCACGTTTTATCCGAAGGCATCTGAGTTAACTATCCT
CATTTCTGTGAACCATATATACTACCCCCGCTATTCCTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_p04.b1 MSMg01no089_p04.b1 CHROMAT_FILE:
MSMg01no089_p04.b1 PHD_FILE: MSMg01no089_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:56 2005
         (471 letters)



>mm_chr4_150433511_150434381
          Length = 871

 Score =  874 bits (452), Expect = 0.0
 Identities = 464/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctaggtgaggtctcagcatacttccactgacacaaagcatttatgaccacctttt 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaattctaggtgaggtcgaagcatacttccactgacacaaagcatttatgaccacctttt 612

                                                                       
Query: 64  ttgattgtaactcttaattttgaatataaggtgataggcgcagctttcttggataatctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttgattgtaactcttaattttgaatataaggtgataggcgcagctttcttggataatctg 552

                                                                       
Query: 124 aattcccaagtgccaggagtaggatttcatgataaaattaatagctaatcttattctgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aattcccaagtgccaggagtaggatttcatgataaaattaatagctaatcttattctgtc 492

                                                                       
Query: 184 tcgtgaagatttaattgctatccttgttacccattcaaaatcagctgtactgtgtgaatg 243
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tcctgaagatttaattgctatccttgttacccattcaaaatcagctgtactgtgtgaatg 432

                                                                       
Query: 244 aaataaagacattaagacgaacccctttctggctgcacggtcgcttatggcagttccaca 303
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaataaagacattaagatgaacccctttctggctgcacggtcgcttatggcagttccaca 372

                                                                       
Query: 304 cagtagttggcgcccaacggggggtccctgagacttgcatgtaaaactagtctagatgtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagtagttggcgcccaacggggggtccctgagacttgcatgtaaaactagtctagatgtc 312

                                                                       
Query: 364 tccttttttgtaagttttatttttgtaattgtgcatgtaaagcatcattgagtcaatgga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tccttttttgtaagttttatttttgtaattgtgcatgtaaagcatcattgagtcaatgga 252

                                                           
Query: 424 tctgttgaagaactcagctgctggaaaccatgcaaaatgttttgaatt 471
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tctgttgaagaactcagctgctggaaaccatgcaaaatgttttgaatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)