BAC Information

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BAC

Clone NameMSMg01-089P19
Chromosome4 (Build37)
Map Location 86,901,063 - 86,901,376
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089P19.T7 (MSMg01no089_p19.b1)MSMg01-089P19.TJ (MSMg01no089_p19.g1)
ACCAG308338AG308339
length794690
length of high quality
(start - end)
321 (124 - 444)374 (72 - 445)
definitionCHROMAT_FILE: MSMg01no089_p19.b1 PHD_FILE: MSMg01no089_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:59 2005CHROMAT_FILE: MSMg01no089_p19.g1 PHD_FILE: MSMg01no089_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNCCCCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCACCANNNNTTATTCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCCAATTGTAATTAGC
ATTTAAAAGACTTTCATAACCATTCTATTCAAATACACCACCTTTGTAGC
CATAGTAACTCTTTTATATTTAGCTTTGATGGCAGCTACCAGTACCTGGT
TTCTTTCCCCTCTGTCATTTCTAATAGAATCCATTTTCTTCTAATATATC
AGTTCTTCCTAAAGGATGGGATAGAAGCAAAATTAGCCATCATAAAAAGG
GTCCAGACTAGAAAGCCATTCCCTACACTAACAGGAAAAGTTAGAAGATG
CTGTCTGCAGACATCCACTTCAAACTCAGTGCCTTTCTCTTTTTCTTTGC
TCCCGATATAATAATCATGTTGCTGACTCAAGTCTTGGCGACTCCAAAAT
TCAAGATAGAAGCCAGCAAGATTTTTTTTCCTTCAAAAAGGACCAGGATC
TTTTATGTGCCTGTTCTATTTCTTTTTATGTATATGAATAAAATGTCACA
TGAGATATGATACATAATATAAAATTTGCATTTCTGTTTCCCTTTTTTTG
TGCCTGCATCAATATCTGATTTTGTGATTGCAGACTTATATCCATATATA
ACTTTTTTGTTAATGAGTGCTCTCTTGCCCATGTGAATGTGAATTATGTT
GTAGCTTTGGCGGCCCCACCTGCATAGTATTAGTTGGTTGTCCG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGACTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAATCT
GGAAAGAACCTATATGCCCCTCATCAGAGTAATGTATACAGAAAATGTGT
TACATCTACTCTATGTATTACTACTCATGTATTATTAAGAATGAATTTAT
GATATTTCCTATTCTAATGTATGTATCTGTAGGTTATCATCCTGATTGAC
TTATTCATTCTTATATAAACTCCCTCTTTATGTATTCTTCGATAATTGGA
TATTATTCTCGTTCTAGGATATCCGGGATATTGGATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_p19.b1 MSMg01no089_p19.b1 CHROMAT_FILE:
MSMg01no089_p19.b1 PHD_FILE: MSMg01no089_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:59 2005
         (321 letters)



>mm_chr4_86900859_86901579
          Length = 721

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccaattgtaattagcatttaaaagactttcataaccattctattcaaataca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcttccaattgtaattagcatttaaaagactttcataaccattctattcaaataca 459

                                                                       
Query: 65  ccacctttgtagccatagtaactcttttatatttagctttgatggcagctaccagtacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccacctttgtagccatagtaactcttttatatttagctttgatggcagctaccagtacct 399

                                                                       
Query: 125 ggtttctttcccctctgtcatttctaatagaatccattttcttctaatatatcagttctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggtttctttcccctctgtcatttctaatagaatccattttcttctaatatatcagttctt 339

                                                                       
Query: 185 cctaaaggatgggatagaagcaaaattagccatcataaaaagggtccagactagaaagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cctaaaggatgggatagaagcaaaattagccatcataaaaagggtccagactagaaagcc 279

                                                                       
Query: 245 attccctacactaacaggaaaagttagaagatgctgtctgcagacatccacttcaaactc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 attccctacactaacaggaaaagttagaagatgctgtctgcagacatccacttcaaactc 219

                         
Query: 305 agtgcctttctctt 318
           ||||||||||||||
Sbjct: 218 agtgcctttctctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)