BAC Information

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BAC

Clone NameMSMg01-090B11
Chromosome4 (Build37)
Map Location 67,551,056 - 67,551,196
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090B11.T7 (MSMg01no090_b11.b1)MSMg01-090B11.TJ (MSMg01no090_b11.g1)
ACCAG308414AG308415
length759747
length of high quality
(start - end)
143 (68 - 210)160 (72 - 231)
definitionCHROMAT_FILE: MSMg01no090_b11.b1 PHD_FILE: MSMg01no090_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:08 2005CHROMAT_FILE: MSMg01no090_b11.g1 PHD_FILE: MSMg01no090_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGTGGTGAACTTTAAGATGTGAGAACATCTGGATCAAAAAGCACATTG
ACATTAAAGAGCTTTTCATAGTGAAAATACCCAGCAACTCCCAGCCTCTT
CCAAGGAACTGAATATAAGGGTGATTTATGTTCTGAGCAATTTTACCTGC
CAATTTGAAGGTCCAAGGCAGGTACTGATGTGCATAGCATCATTATATCA
CTGAAAGTCAAATTGCTAGAATCAGTTAAATCTATGGACTATCCCACAGA
TTGTCTGTAAGGAAAAAAAATGTTTCAGTGTGGGGGTGGTTGTTAATTCA
AAAATATTTATTTTTTTATCCCCCCCCCCCACCACCAATTGTCTCGAATA
TTAGAGAAAAAGCATTTTTAAACCTTTATAAATAAATATTATATTAGCGT
TTGTTGATTTCCACCAACATTCTACCCCCCCCACACACCACATTCTCATA
ATTTCCCTTCTACAAACTACACCCTCTACTACTAACATCAATCATTCTTC
TTTTTTTCATCTATTTTACTCTTTACTTCTACCAACATATATATCATTTT
AATTTCTTACTTATTTACATCTAACTACTTAACATCAAACAATATATGAC
TAAACACACATCCTACTTTATATACATTCTAAACCAAATCATTACAAAGT
ACACCATACTCTTTTTTTTTCCTCTTCCCTTCCTATCATCTTCCTCACTA
TCAATATCA
TACACGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTAACATTAAA
GGGTGTTGAACTTTGTCAAATGCTTTTCCATTCTCTAATGAGATGAGCAT
GTGTTTTTTTCTTTCAGTTTGTTTATATAGTGAATTAAGTTAATGGTTTT
CCATATATTGACCCACACTTACATCCCTAGGATGTATCCTACTTGACTGT
GGTGAATGATCATTTTGATATATTCTTAGATTTCAGGAATTTTGATGAGT
ATTTTGCATCAATGTTCATCATTTAAATTAACTTAAAGTTCTCTTTCTTT
GTTGAGCCTTTTTTGTTTTCTCCCCCCCCCCCCTATCTTTTGGCTTCATA
AAAAAAATTGTTCTTTCAGTTTTGATTTAGAGAAATATTTTTCAATGCAT
TGCTATTTATATCTTCTTTTATTAGCTTTGATATAATTCTGCACCATCAC
TATCTTGTCCTTGATTGTTTGAGAGCCTTCCTTCCTTATGTCTCCCGCCT
AAATATATTTCCTCCTGCTTGATCTTTCTTCTTTTCTCCCCCTACATTAT
ACCGCACTTGTACAAATCTAATTTCTTACTATTTATAAAACAACATTTTC
CATTTTCTACTCTATGCCATTTCTTTTTTTACTTTCTATTATTAATTTCA
TAAACCCTCACTCCATTCTCTTATATATCAATACAACTACCATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_b11.b1 MSMg01no090_b11.b1 CHROMAT_FILE:
MSMg01no090_b11.b1 PHD_FILE: MSMg01no090_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:08 2005
         (143 letters)



>mm_chr4_67550856_67551398
          Length = 543

 Score =  265 bits (137), Expect = 8e-76
 Identities = 140/141 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgtgagaacatctggatcaaaaagcacattgacattaaagagcttttcatagtgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgtgagaacatctggatcaaaaagcacattgacattaaagagcttttcatagtgaaaa 260

                                                                       
Query: 61  tacccagcaactcccagcctcttccaaggaactgaatataagggtgatttatgttctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacccagcaactcccagcctcttccaaggaactgaatataagggtgatttatgttctgag 320

                                
Query: 121 caattttacctgccaatttga 141
           | |||||||||||||||||||
Sbjct: 321 ccattttacctgccaatttga 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)