BAC Information

Click to search

BAC

Clone NameMSMg01-090G03
Chromosome4 (Build37)
Map Location 113,248,102 - 113,248,514
singlet/doubletsinglet
Overlap geneLOC242627
Upstream geneLOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607
Downstream geneLOC100040625, A630098G03Rik, LOC666048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090G03.T7 (MSMg01no090_g03.b1)MSMg01-090G03.TJ (MSMg01no090_g03.g1)
ACCAG308629AG308630
length705706
length of high quality
(start - end)
564 (44 - 607)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no090_g03.b1 PHD_FILE: MSMg01no090_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:31 2005CHROMAT_FILE: MSMg01no090_g03.g1 PHD_FILE: MSMg01no090_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:31 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCTATAACTAATAGAATTTAATTTTTAGGGCATAAGGTGAATGCAA
CAAAAAATTAATATTTTAACTGAAAAAAATGCCTAACTACAGATACTATG
ATTTTCCTGTTTGTGGATAAGAGTGTTTACATAGACTGTTTACAATGTTT
TAATAAGGCATTTAAAGAATCCCAAATATAATGGTAATTAGAATCTGGCT
GTGAATATCAATAGTTTTGCTGAGACCCATTCTATGATGTCACCTTTGAT
AGGTAGAAAAGGCTTTGTCTGATATGAATGACTTACATTGTTACGTAGGT
TGAGTTCTTAAAAACTTACTGTAATAAAGATGGGATATATAGTGGACTAA
GTAGAAAAAGAGGTCTGCTTGATTCATCCAAAGATGAATGTGACAGCTGG
CATTCAACGGACATTTTCAATGAAATGTCAAATTATATGTATCAGGCAGT
AATATTGATCAATAAGGCATAACCAAGATACTCAGAGCAGTTGTTATAGC
AAGTACAATTCTGACATGCTGAAATTGAAAGAACAATGTGGCTTTGCAGC
TTTAAGTTTCCTGGGAAAAGCTTCAGGAGCAAAGAAAATACTATCTTATT
TACAAAGATTATACAAGCTTTGTAGAAGCCTTCATTGATTATAACCTTAT
AGTGA
GAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAAAGACTGGGAGGAAG
AAGCAGCCCATTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCAAAAGCG
GCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCAGTCGGTTTCAAGG
TCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGCGCAG
AGAGATGCGCAGAGAGGCAATGCGCAGAGAGATGCGCAGAGAGGCAATGC
GCAGAGAGATGCGCAGAGAGGCAGTGCGCAGAGAGATGCGCAGAGAGGCA
GTGCGCATATAGGCAGCGCGCACACAGGCAGTGCGCAGACTCATTCATTC
CCAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGA
GCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAGA
ACTCGCCGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGG
TGCAGTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGCTGACTGGCAA
ACGATTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAG
AGCGCTTTGGCACGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTG
CTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_g03.b1 MSMg01no090_g03.b1 CHROMAT_FILE:
MSMg01no090_g03.b1 PHD_FILE: MSMg01no090_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:31 2005
         (564 letters)



>mm_chr4_113248097_113249067
          Length = 971

 Score =  426 bits (220), Expect = e-123
 Identities = 366/420 (87%), Gaps = 21/420 (5%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcagctataactaatagaa-tttaatttttagggcataaggtgaatgcaacaaaaaatta 67
           |||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 418 tcagctataaataacagaattttaatttttagggcataaggtgaatgcaacagaaaatta 359

                                                                       
Query: 68  atattttaactgaaaaaaatgcctaactacagata-c-tatgattttcctgtttgtggat 125
            ||||||||||| | | |||| ||||||||||||| | || | ||||||| |||||||||
Sbjct: 358 gtattttaactg-atataatgtctaactacagatatcata-g-ttttcctctttgtggat 302

                                                                       
Query: 126 aagagtgtttaca------tagactgtttacaatg-ttttaa-taag-gcatttaaagaa 176
           |||||| ||||||      |||||||||||||||| |||||| || | |  |||||||||
Sbjct: 301 aagagtatttacatgtacctagactgtttacaatgtttttaattatgtg--tttaaagaa 244

                                                                       
Query: 177 tcccaaatataatggtaattagaatctggctgtgaatatcaatagttttgctgagaccca 236
           ||||||||||||||||||| ||| ||| |||||||  | |||||||||||||||||||||
Sbjct: 243 tcccaaatataatggtaatgagattctagctgtgagcagcaatagttttgctgagaccca 184

                                                                       
Query: 237 ttctatgatgtcacctttgataggtagaaaaggctttgtctgatatgaatgacttacatt 296
           ||||||||||| | ||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct: 183 ttctatgatgtgaactttgatagatagaaaaggctttggcggatatgaatgacttacatt 124

                                                                       
Query: 297 gttacgtaggttgagttcttaaaaacttactgtaataaagatgggatatatagtggacta 356
           |||  |||| ||||||||||||||| ||| |||||||||||||||||||| ||| |  ||
Sbjct: 123 gttgtgtagattgagttcttaaaaatttaatgtaataaagatgggatataaagtag--ta 66

                                                                       
Query: 357 a--gtagaaaaagaggtctgcttgattcatccaaagatgaatgtgacagctggcattcaa 414
           |  ||||| |||| ||||||||  ||||||||||| ||||||||||||||||||||||||
Sbjct: 65  aatgtagagaaaggggtctgctcaattcatccaaaaatgaatgtgacagctggcattcaa 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 971
Length adjustment: 10
Effective length of query: 554
Effective length of database: 961
Effective search space:   532394
Effective search space used:   532394
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)