BAC Information

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BAC

Clone NameMSMg01-090I23
Chromosome4 (Build37)
Map Location 135,779,944 - 135,780,140
singlet/doubletsinglet
Overlap geneDdefl1
Upstream geneClic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2
Downstream geneTcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090I23.T7 (MSMg01no090_i23.b1)MSMg01-090I23.TJ (MSMg01no090_i23.g1)
ACCAG308757AG308758
length658775
length of high quality
(start - end)
197 (91 - 287)241 (134 - 374)
definitionCHROMAT_FILE: MSMg01no090_i23.b1 PHD_FILE: MSMg01no090_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:45 2005CHROMAT_FILE: MSMg01no090_i23.g1 PHD_FILE: MSMg01no090_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAACAACTGGTATTGTCCTTTGTGCCCCTCCCCCACCTGAGACCACACAC
ACACACACACACACACACACACACACACACACACACACACAAACTCTCCA
CCACTCTGGCTCTCAGCCTGTGCTTTCTGCCTGTGCAAAAGACCACAGAT
GGCAGCACCAGACCATGCCCAGATGCCCTGCCTATAAAGGTCTTCTGCCT
GCACCTCTCCTTGGTTCAGGATGCATCAATAGCACCCATTCTTCATCCCT
GTGGCTCTGCGGTGCCTTCTGTGGTTACCATGGCAACCGAGCAAAGGGAC
AGATTTTTTTTGTTCACCCCCCCCCCACCTTTCACTCCTTTGGACCAGTA
TAATACCTGTCCCACACACCATAAAAAGAAACTCCAGTGAGCGTTACGGC
TATCACCAATTCAGCAACCGCGGTTCTCCCATTGGATCTGGATTTGTCAT
TCTGCTGAGAGCTCTCACGCACCCGCTGTCTGTACACTCTTGCTTGTACC
TATAGCTGAATCATGATTTGCACTGACCACTTACTGCTTTGTTCTGTATC
ACCGCGAGGGTGCCTTCTTAAGAACCAAGCCACTGAATATATACATAGCC
CTTTAACTGTATAACTAATACTGCAAAATCTAAATAATGACTATTTCCTC
TATCCCTC
TTTTTTTTTTTTTTTTTTTTTTTNNTNNNNTNNNTNTNNNTTNNCTTTAA
TNNNNATACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATGTGTGTGTTCCCA
TGTGTGTGTGTCCCATGTGTGTGAATTCCCATGTGTGTGTTCCCATGTGT
GTGTGTTCCATGTGTGTGTATGTGTGTGTGTTCGATTTGGTAGCACAGAT
ACTAAAGTTGGAACAATACAGAGAAGACAGGTTTGTCCTCTGAGCAAGAC
CCTCGAGTTAGTGAAGCATGCTGTATTAAGATTTCTTTTCTGTTGGCATG
TGCATATGTGATGTATATAAGGATATACATGTTTCGGTACGAGTGTGGCA
TTCATAGGGCGACTTTGTTTAATATTTTTCCCCACCCCCCCTTCTCGTGT
GTTACAGATTGAACTTGCCTCACCCCCCCTGATAAAAAAAAAGCCTTTAT
CCCTGGGAGGGTTTCACTATACTCCCTTGTCAAACATCCTCCTGCCTCTG
CCTCCTGAGTGCTGTATATGTTTAATATCGTCCTCCTGGCCCTGTCTTGA
CTGATTTCAAGCTGCCCGTATTTATCAGTTTAACCGATGAATGTATGTCC
ACACTGCTCTAAATATTTAAATTCCTTTTCCCATACTCCTACCTTTTTCC
CCCTCAACTAAACAACTATCTCCCTTTTCTATGATGTTCGAAATATACCC
CACTCATGAATTACCCCGTTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_i23.b1 MSMg01no090_i23.b1 CHROMAT_FILE:
MSMg01no090_i23.b1 PHD_FILE: MSMg01no090_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:45 2005
         (197 letters)



>mm_chr4_135779744_135780340
          Length = 597

 Score =  350 bits (181), Expect = e-101
 Identities = 193/197 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactctccaccactctggctctcagcctgtgctttctgcctgtgcaaaagaccacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaactctccaccactctggctctcagcctgtgctttctgcctgtgcaaaagaccacagat 338

                                                                       
Query: 61  ggcagcaccagaccatgcccagatgccctgcctataaaggtcttctgcctgcacctctcc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 ggcagcaccagaccatgcccagatgccctgcctagaaaggtcttctgcctgcacctctcc 278

                                                                       
Query: 121 ttggttcaggatgcatcaatagcacccattcttcatccctgtggctctgcggtgccttct 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 277 ttgggtcaggatgcatcaatagcacccattcttcatccctgtggctctgcggtgccagct 218

                            
Query: 181 gtggttaccatggcaac 197
           |||||||||||||||||
Sbjct: 217 gtggttaccatggcaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)