BAC Information

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BAC

Clone NameMSMg01-090M14
Chromosome4 (Build37)
Map Location 52,529,102 - 52,529,323
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883
Downstream gene4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090M14.T7 (MSMg01no090_m14.b1)MSMg01-090M14.TJ (MSMg01no090_m14.g1)
ACCAG308918AG308919
length751723
length of high quality
(start - end)
321 (41 - 361)222 (70 - 291)
definitionCHROMAT_FILE: MSMg01no090_m14.b1 PHD_FILE: MSMg01no090_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:03 2005CHROMAT_FILE: MSMg01no090_m14.g1 PHD_FILE: MSMg01no090_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGTTTATATCTGTTCCCCATTTTTAATGGGATTATTTGAGGGGTTTTT
TTTGTATCTAGTTTCTTCGAATTCCTTACATTTTGTATATTAATCCTCTA
ATGAATGTGGAGTTGAAAAAAAAAACTTTTCTAATTCTATAGGCTGCCAT
TTTGTCTGATTGACTGTGTACTTTGCCTTACAGAGGCTTTTCAGTTTTTT
GAGGTCCCTTTTATTAATCGTTGATCTTAGTGTGTGTGTGGAGTACTTTT
CAGAAAGTCATCTCTTCTACCAATGCCTCAGGATAATTCTTGAATTTCTC
TTTTATTTTTTTCACCGCCCCCCCCCTCGTTTGATGTCTTCGATCTTTTT
TGGTCTGAGTTTTGTTCATTGTGAAAATTATAATTCTATTGGCATCCATT
TACATGATTGGCACACACTTACTAACACCAACACCATTTGACTTGAACAC
ATTCTCCTAATTAAATTTAAATTCTTTACTTCATATATTAACATCATATA
TTTCACTATGAACCTCCCCTCTACACCTTGATATTTCTATACTCATCTTC
TAATATATTTTTATACATTATTTAAAAATCACCCTACAGTATTTTTGTAC
GTCTCATCTCGTTACCCTATCCACTAGATTACCTCAAATGCAGACTATCC
TAACGAATCCCACACACACTTCCTTCCAACTTAACACTACCTTAATACAC
G
TAGTGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATACTTTGTATTACAAAAATGAGTCAACGTC
TTATATACATAGGTACAACTTTTGTGTGATAGTTTGCTTTAGAAGTTCAG
TAGTTGTGACAGGTCAGATTGTCTCTGCCTGACTGCAGAATCTTCTCGTG
TCTATGCCTGTCATCAATATTAGTGTTGCTGAATAAATGTAAAAACTCAT
AAAGTTATTTTCTGTTGAAATAAAAAAATCAATATTTCAGGCCTTAAAAC
TTCTGACAGTGACAAACAGCTTGGTTTTTCTTTGTAGCAGGAAAAATGTG
AAAATTATTGAATATGTATTACTATCTAACAACCTCAGATTGAAGCCTTA
TTCACTAATTATTAACCCCCTGTTTTACACCCATGTTGGTTTGGGTACTG
TTTAACTACTCAGATGACTCAATTTATGCGATTACTAAACAGCTAATTGA
GTCACAAACATACTAAACTAATTATTATTCGAGTAAATAAGTAATAAAAG
TCAAATGACAAGTTGAAATCTGCTATCATCCAGTTTCTAATTTCTCTGAA
ATACTTTCTTTCTCTGACTATAATTAGTGTTAGTATTATCTATCTCCCCA
TATATCCATATATAAGTATATACTTATGTATTAATAGATGCTATATTCAT
ACAGCCTTGTTTATACTTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_m14.g1 MSMg01no090_m14.g1 CHROMAT_FILE:
MSMg01no090_m14.g1 PHD_FILE: MSMg01no090_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:03 2005
         (222 letters)



>mm_chr4_52528902_52529523
          Length = 622

 Score =  414 bits (214), Expect = e-120
 Identities = 220/222 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactttgtattacaaaaatgagtcaacgtcttatatacataggtacaacttttgtgtga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atactttgtattacaaaaatgagtcaacgtcctatatacataggtacaacttttgtgtga 260

                                                                       
Query: 61  tagtttgctttagaagttcagtagttgtgacaggtcagattgtctctgcctgactgcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtttgctttagaagttcagtagttgtgacaggtcagattgtctctgcctgactgcaga 320

                                                                       
Query: 121 atcttctcgtgtctatgcctgtcatcaatattagtgttgctgaataaatgtaaaaactca 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 atcttctcgtgtctatgcctgtcatcaatagtagtgttgctgaataaatgtaaaaactca 380

                                                     
Query: 181 taaagttattttctgttgaaataaaaaaatcaatatttcagg 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaagttattttctgttgaaataaaaaaatcaatatttcagg 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)