BAC Information

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BAC

Clone NameMSMg01-090P24
Chromosome4 (Build37)
Map Location 145,026,262 - 145,026,822
singlet/doubletsinglet
Overlap genenone
Upstream gene1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282
Downstream gene9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090P24.T7 (MSMg01no090_p24.b1)MSMg01-090P24.TJ (MSMg01no090_p24.g1)
ACCAG309071AG309072
length677680
length of high quality
(start - end)		565 (45 - 609)552 (80 - 631)
definitionCHROMAT_FILE: MSMg01no090_p24.b1 PHD_FILE: MSMg01no090_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:21 2005CHROMAT_FILE: MSMg01no090_p24.g1 PHD_FILE: MSMg01no090_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGATGATACCAAGATGGAATTTTCGGGTAAAGCATTTGTCACAT
TCACTACATTTGTAAGATTTCTCTCCTGTATGAATTCTCTGATGGATTCT
CAAATTAAAGTTGTGGGTAAAGCATTTGTCACATTGACTACATTTGTGAG
GTGTCTCTCCTTTATGAATTCTCTGATGCATAGTAAGATTGAATTTGTGT
TTAAAACATTTGTCACATTCACTACATTTGTAAATTATCTCTTCTGTATG
AATTCCCTGATGAATACTAAGATGGATCTGATGGGTAAGGCATTTGTCAC
TTTTACTACTTTCGTAAGGTTTCTTTCCATGATAAATTCTCTGCTGACTT
TGTAGTTTTTCTCTCTGGGTAAGATATTTGTGAAATTCACTACATTTGTA
AGGGTTCCCTCCAATATTGTTTCGTTTCACCATGACTTTATGTTTAGAAA
CAAAAACCTTCTCTAATTCTGCATTTCGGTTGTGTTTTTTCTTCTGCATG
TAAATTCCTTGATTGACACTAATGGTAGAAAACAAACTTAAACTGTTTAC
AGAGTCATTGAATTTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTCTTT
TTTGGTTCGAGTATTGAAGAGAGTCAG

NNNCCACGATGAAGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCTAATCTGTGCAGTTCT
CAGATACTGTCAGAGGAAACTCTTCCTACTTTATTCTGACCCGTTCTTGA
TGTGTGTCCTACTTCTGTAATGTAGAAGGTTGATATTTTTTTCTAGGACT
CATCATGTCTTCTTCAATTGTGATGGGTTTGTGTATACCTCTCTACAGTA
CTGCATAAGGGAACACTGGAGTCATGTCATACATGGCAGTGTCTCCTTTT
TAGCTCTAGCTCTCATCCATACACAAACCTTCTTTTAATTTAAATAAGCT
GAACATTATTTTGTTAGGACTTTAGTGTCTTCACAGGAACAAGTCCATTA
TATTAAACCATTGCATTCTCTTTGAGTCTCTATTCATTAATTTCTAAATA
ACCTTATTAATGTCTTTCTCTGTACTATTTTCCGAGTGACTCATTTTCAT
GCTTGTTAGCCCTCACAATATGTAATTATGTGAAAGTATCTCACTGCCAT
ATTTCTCAATGTATCTTTACCACCCCACTTCTGTGCAACTGTCTTCCTGA
CTGTGCTGGCACTGACCCTGACACTCTAAAAAAGTATCCTTCATGCTCCA
TAAATTCTGTCCCAATGTTTATTGATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_p24.g1 MSMg01no090_p24.g1 CHROMAT_FILE:
MSMg01no090_p24.g1 PHD_FILE: MSMg01no090_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:21 2005
         (552 letters)



>mm_chr4_145026072_145027024
          Length = 953

 Score =  884 bits (457), Expect = 0.0
 Identities = 532/563 (94%), Gaps = 15/563 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctaatctgtgcagttctcagatactgtcagaggaaactcttcctacttt-attctg 59
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||
Sbjct: 191 catgctaatctgtgcagtcctcagatactgtcagaggaaactcttccta-tttcagtctg 249

                                                                       
Query: 60  acccgttcttgatgtgtgtcctacttctgtaatgtagaaggttgatatttttttc----- 114
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
Sbjct: 250 acccgttcttgatgtgtgtcctacttctgtaatgtagaagggtgatatttttttcacttt 309

                                                                       
Query: 115 -----taggactcatcatgtcttcttcaattgtgatgggtttgtgtatacctctctacag 169
                ||||||||||||  ||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 310 ttttctaggactcatcacatcttcttcaattgtgatggatttgtgtatacctctctatag 369

                                                                       
Query: 170 tactgcataagggaacactggagtcat-gtcatacatggcagtgtctcctttttagctct 228
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 370 tactgcataagggaacactgcagtcattgtcatacatggcagtgtctcctttttagctct 429

                                                                       
Query: 229 agctctcatccatacacaaaccttcttttaatttaaataagctgaacattattttgttag 288
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agctctcatcgatacacaaaccttcttttaatttaaataagctgaacattattttgttag 489

                                                                       
Query: 289 gactttagtgtcttcacaggaacaagtccattatattaaaccattgcattctctttgagt 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gactttagtgtcttcacaggaacaagtccattatattaaaccattgcattctctttgagt 549

                                                                       
Query: 349 ctctattcattaatttctaaataaccttattaatgtctttctctgtactattttccgagt 408
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 550 ctctattcattaatttctaaataaccttattaatgtctttctctgtactattttccaagt 609

                                                                       
Query: 409 gactcattttcatgcttgttagccctcacaatatgtaattatgtgaaagtatctcactgc 468
           |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 610 gactcattttcaagcttgtaagccctcaca-tatgtaattatgtgaaagtatctcactgc 668

                                                                       
Query: 469 catatttctcaatgtatctttaccaccccacttctgtgcaactgtcttcc-tgactgtgc 527
           || ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 669 caaatttctcaatgtatctttaccaccccacttctgtgcaactgtctttcatgactgtgc 728

                                  
Query: 528 tggcactgaccctgacactctaa 550
           | ||||| |||||||||||||||
Sbjct: 729 ttgcactcaccctgacactctaa 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space:   511106
Effective search space used:   511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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