BAC Information

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BAC

Clone NameMSMg01-091E22
Chromosome4 (Build37)
Map Location 113,407,253 - 113,407,484
singlet/doubletsinglet
Overlap geneLOC242627
Upstream geneA030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607
Downstream geneLOC100040625, A630098G03Rik, LOC666048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091E22.T7 (MSMg01no091_e22.b1)MSMg01-091E22.TJ (MSMg01no091_e22.g1)
ACCAG309294AG309295
length725722
length of high quality
(start - end)
400 (123 - 522)235 (129 - 363)
definitionCHROMAT_FILE: MSMg01no091_e22.b1 PHD_FILE: MSMg01no091_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:46 2005CHROMAT_FILE: MSMg01no091_e22.g1 PHD_FILE: MSMg01no091_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGG
ATTATCTGGGTACCACAGAACTGGAAAGACAGTAATAATTCTGGAGAGAC
AGTAATATTTTTAGACCCTGAAGAGACAGTAATACCACAGGACTGGAGAG
ACAGTAATGCATTCAACGTGGTTTAAGCCATATAAAGACATCAAAATAGA
TGGACTGACTCACAGATACTGGGACCCCTCAACTATTTCCAGGCAGGTTT
TCTTATAATATCAGAAATTGGAGAAAAGTAGCAAGTGGATAGGCATAAAA
AACTATTGTGTAGTAGAAGAGCTGTTCAGTGCTCAGCTTAGTATGCTTTT
TATAATTTGTTTCAAGAATCCCAAATATAGAGATAATTAGATTCTGTCTC
TGAACTTCTTCATACTTGCTGAGACTATTGGTATTATATAATCTTTGGTA
GGTGGAAAAGACTTTGACAGATCTGGATGACTTACACTGTTATTTAGGTT
GAATTCAGAAAAGAGTTAATGCAACCAATGTGAGAGACATATAGAAGAAT
GTATAAAAACTGGTCTGCTAGGTACACTCAAAAATGAAAGTGACATCTGG
CATGCTAGGGAAATTTTCATTGAAATATCAAATGCTATGTACCAGCTGGC
ATTAATGATTCATGAAGTGAACCAAATGGCATGATATTACCGTGGATGGA
CCCCATTTTAAAGGGAATAAGCTGT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTCTCCAACTCCTGAACGGGGCTT
GGGCAGCAATATAGTTTGCACCCGGCAAGACTTGAAGGTGGTTGGTTTTG
AGGGTCTACAGAGCATGGCCTAGAGACATCTTCACTGGAGAGAGCCTTTC
TGTGTTCACTTCTCCCTATGCATCACTCCACACTTTACCTCCCCCGCCCC
CAAAAAGGGACAGAGACAACTTGGATCTTTGTACACTCAGCTCCTCCCTC
TGAATAAAGAATCAGGAAATATTGGTACAAGGGCTCTGGACCAGGTAATT
CATTGATATATTATAAGGACTCTCCACCCTTTTGATATTAAGATGGGATA
TTTCACTTGCATTTCACCTAGATCTGAAATATTAGTTACTGACTCCAAAT
AGAGAGAGCAGTGTTAATTGCTTCTATGAACAGGCATTAATTAATAGAAG
ACTGTGGCTCCAGGTAGAAAGCATAACAGATACCTATTATAATACGCATT
AACTAAATAAATGCCTGTGGTTTAATGTAGAGAGCATACCCAAAAAAAGG
CGTCGCAATAGGATGCCTGTACTAGGCACAAAGTTTAATAATTAATATGT
AATTGCTTCCCACACACAGGTATTACTGATGGCCTAACATAATTGCTTTA
CACACGCTATACAGACATCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_e22.g1 MSMg01no091_e22.g1 CHROMAT_FILE:
MSMg01no091_e22.g1 PHD_FILE: MSMg01no091_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:46 2005
         (235 letters)



>mm_chr4_113407053_113407687
          Length = 635

 Score =  267 bits (138), Expect = 4e-76
 Identities = 210/234 (89%), Gaps = 4/234 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacttgaaggtggttggttttgagggtctacagagcatggcctag-agacatcttcactg 59
           ||||||||||||| |||||| |||||||||||||||||||||||| || |||||  ||||
Sbjct: 201 gacttgaaggtggctggtttggagggtctacagagcatggcctagaag-catctaaactg 259

                                                                       
Query: 60  gagagagcctttctgtgttcacttctcc-ctatgcatcactccacactttacctcccccg 118
           |||||||||||| | |||||||||| || |||| |||||||||||||  |||||||||| 
Sbjct: 260 gagagagcctttttttgttcacttc-cctctatccatcactccacaccctacctccccca 318

                                                                       
Query: 119 cccccaaaaagggacagagacaacttggatctttgtacactcagctcctccctctgaata 178
           || ||||| |||| || |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 319 cctccaaacaggggcacagacaacttggatctttgcacattcagctcctccctctgaata 378

                                                                 
Query: 179 aagaatcaggaaatattggtacaagggctctggaccaggtaattcattgatata 232
           |||||||||| ||||  || ||||||||||||||||||||||||||||||||||
Sbjct: 379 aagaatcaggtaataaaggcacaagggctctggaccaggtaattcattgatata 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)