BAC Information

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BAC

Clone NameMSMg01-092F16
Chromosome4 (Build37)
Map Location 10,779,873 - 10,918,470
singlet/doubletdoublet
Overlap geneLOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2
Upstream geneGdf6, 4930448K20Rik, LOC666840, 1700123O12Rik, LOC383991, LOC100039656
Downstream gene2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092F16.T7 (MSMg01no092_f16.b1)MSMg01-092F16.TJ (MSMg01no092_f16.g1)
ACCAG310063AG310064
length736754
length of high quality
(start - end)
288 (184 - 471)293 (135 - 427)
definitionCHROMAT_FILE: MSMg01no092_f16.b1 PHD_FILE: MSMg01no092_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:11 2005CHROMAT_FILE: MSMg01no092_f16.g1 PHD_FILE: MSMg01no092_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:11 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(10,918,183 - 10,918,470)(10,779,873 - 10,780,165)
sequence
NNNNNNNNNNNNNNNNNNCCCCCCCCCCCCNNNNCCNCCCCCCCCGCCTC
TATCACCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCGCGGAATTATACTTTCTGTGTGCTAATTTCTTTTCTTTTTTCCCCTAA
AGGTTATTAGCAAAAGATGTTGGACCGCCTGGCAAACAGTGAGGCGAATA
CTAGACGCATAAGTATTGTGGAGAACTGTTTTGGAGCCGCTGGTCAGCCC
TTGACCATCCCTGGGCGAGTGCTTATTGGAGAAGGAGTGTTGACTAAGCT
GTGCAGAAAGAAGCCTAAAGCAAGGCAGTTTTTCTTATTTAATGATATTC
TAGTATACGGCAATATTGTTATCCTGAAGAAAAAATACAACAAACAGCAT
ATTATTCCCTTGGAAAATGTCACCATTGATTCCATCAAAGATGAAGGGGA
ATTACGGAATGGATGGCTTATTAAGACACCGACTAAGTCGTTTGCAGTTT
ATGCTGCCACTGCCACGGAGAAATCAGAGTGGATGAATCACATAAATAAG
TGTGTCACTGATTTACTCTCCATAAGTGTTAAGACGCCCAGCAACGAGCA
TGCTGCTGTCTGGGTTCCTGAATCTGAGGCCACCGTGTGTATGCGCTGTC
AGAAAGCAAAATTCACATCTGTCTATCTGGGTTTTCTTTGACCTAAAAGT
GGCTTTTGTTGTCTGTGGCTCCTGCATCTGAAAAGG
NNNNNCCCCCCCCCCCCNNCCCCCCCCCCCCNNCGNNNNNNNNNCGCCCC
CCTACCNCTCGATGATATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCCCAGCTCAGTC
ATTGCCATCAGACATGCAGAGAACTCAATGCCAGACAGCAGTACCCAAGG
AAACTGACCTGACCTTGGGGAAAGGGGTGTGTCAGATTAAACCACTAAAC
AGTTAAAGCATTTAATAGTAATCTTGGGTCTAGTCCAGTCCAGCATAGAT
ACACAAAGGACTAGAACTGGAGTCCTAAATGGAAATGCAAATGTATGAAC
TATGAAGACAGTCATAGCTGAGCTGATATCAATTTGATTCCAGGTATACT
CCTTCATATTGAAACAGACTCTACCAGGACCAAGAGAGACAAAGAACCAT
GTCCTAGTAGCAGAGCTTAACCCACGCCAGACGTTGATCCAAGCTCTCAT
CGTGTGGTGATTTGAACATCTCCGCCCCCCCATGATTCCAGTGTCTGCAC
CGCTTGAACATATTTAACTTCACTTTAACAATAAGTTTCCGACCTATTTG
TACTACTGCCTCTCCTTCTTTTTCTTCATTTTTCCCCCCTTTTTCCCTTA
TTTCTCCTCTCTCCCCTTCCTCTTTTTTATCTCCTCCCCCTTTTCCCCCC
TCCTTTCTCCCTCCATTTCTTCTTCTCCCTTTTTTTCTTTTATTTCTCCA
CCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_f16.b1 MSMg01no092_f16.b1 CHROMAT_FILE:
MSMg01no092_f16.b1 PHD_FILE: MSMg01no092_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:11 2005
         (288 letters)



>mm_chr4_10917983_10918670
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacagtgaggcgaatactagacgcataagtattgtggagaactgttttggagccgctgg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 488 aaacagtgaggcgaatactagacgcataagtattgtggagagctgttttggagccgctgg 429

                                                                       
Query: 61  tcagcccttgaccatccctgggcgagtgcttattggagaaggagtgttgactaagctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 tcagcccttgaccatccctgggcgagtgcttattggagaaggagtgttgactaagttgtg 369

                                                                       
Query: 121 cagaaagaagcctaaagcaaggcagtttttcttatttaatgatattctagtatacggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cagaaagaagcctaaagcaaggcagtttttcttatttaatgatattctagtatacggcaa 309

                                                                       
Query: 181 tattgttatcctgaagaaaaaatacaacaaacagcatattattcccttggaaaatgtcac 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tattgttatccagaagaaaaaatacaacaaacagcatattattcccttggaaaatgtcac 249

                                                           
Query: 241 cattgattccatcaaagatgaaggggaattacggaatggatggcttat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cattgattccatcaaagatgaaggggaattacggaatggatggcttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no092_f16.g1 MSMg01no092_f16.g1 CHROMAT_FILE:
MSMg01no092_f16.g1 PHD_FILE: MSMg01no092_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:11 2005
         (293 letters)



>mm_chr4_10779673_10780365
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatccccagctcagtcattgccatcagacatgcagagaactcaatgccagacagcagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatccccagctcagtcattgccatcagacatgcagagaactcaatgccagacagcagtac 260

                                                                       
Query: 61  ccaaggaaactgacctgaccttggggaaaggggtgtgtcagattaaaccactaaacagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaggaaactgacctgaccttggggaaaggggtgtgtcagattaaaccactaaacagtt 320

                                                                       
Query: 121 aaagcatttaatagtaatcttgggtctagtccagtccagcatagatacacaaaggactag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagcatttaatagtaatcttgggtctagtccagtccagcatagatacacaaaggactag 380

                                                                       
Query: 181 aactggagtcctaaatggaaatgcaaatgtatgaactatgaagacagtcatagctgagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactggagtcctaaatggaaatgcaaatgtatgaactatgaagacagtcatagctgagct 440

                                                                
Query: 241 gatatcaatttgattccaggtatactccttcatattgaaacagactctaccag 293
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataacaatttgattccaggtatactccttcatattgaaacagactctaccag 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)