BAC Information

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BAC

Clone NameMSMg01-092H18
Chromosome4 (Build37)
Map Location 59,856,989 - 59,857,125
singlet/doubletsinglet
Overlap geneSnx30
Upstream geneAI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik
Downstream geneSlc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092H18.T7 (MSMg01no092_h18.b1)MSMg01-092H18.TJ (MSMg01no092_h18.g1)
ACCAG310162AG310163
length742738
length of high quality
(start - end)
137 (218 - 354)---
definitionCHROMAT_FILE: MSMg01no092_h18.b1 PHD_FILE: MSMg01no092_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:21 2005CHROMAT_FILE: MSMg01no092_h18.g1 PHD_FILE: MSMg01no092_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNCCCCNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCNNCCCCCCC
TAAATNTTCAACATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTGTATTTACCAGAAACACAGAGAAATTTGGGCA
GTTGAATAATTTATACACTAGCAAAAGTTTCGCCCAAACATGATGCTAAT
GACACGAAATACGACAGGCTATATACAGCACAATTTTTGTGGAACTGTGG
GGCTTCTGTTCCCTAGAGTAATGCAACCATGTGCATGAGCTCTGCACTTA
GGCTGCAACACATGGATGCAGTTTTAAATTTGATGACAGCTCATCTTACT
GTAATAAACTTAGGAAAAAACTTTTTGATGTCTTAAAATTCCAAACCCCA
TAGCTTACAACACAAACCTCCCTTTTTTCTTTTTCTTGCTGTTTCTTGCT
TTGACAAGTCCCAAGGATTAATCCCACAGCCTCATGCATTCAGAGATCCT
GTTTCCTCTCTTATTCCTTACTGTTCCAAAAGTAACTCTTATTAATTTAC
TTTTGTGTGCGTGCTGTTCAGAGGATAACTGGTAAGAGTCCAGGGGATTG
AATTCGTTTTGTCAGGTTTGGTAATAACCACCCACCTCCTGATGAGACAT
CTTGCAAGTCCAATTCTAAATTTTTTCTCTGCGAACAAAATTCTTGGCTG
CAATTTTTATTTTTTCTTCAATAGACTCCGATAACCTCGGTA
NNNNNNNNNNCCCCNCCCCNCCCCCCCCCCNNCCNCCCNNNNCCCCCCAC
CCCCCCCAACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCC
CATTTTTTAATGGGATTATTTGATTTCCTGAAATCTGCCTTCTTGAGTTC
TTTATATATGTTAGATATTAGCCCCTATCTGATTTAGGATAGGTAATGAT
CCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTACTGACGGTGTCTTTTG
CCTTGCAGAAGCTTTGGAGTTTCATTAGGTCCCATTTGTCTATTCTCGAT
CTTACCGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCC
CATATCTTCAGGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGACT
CTGGCTTTATGTGAAGTCCCCTGATCCATTTAGATTTGACCTTAGTACAA
GGAGATAAGCTATGGATCGATTCGTATTCTTCTACATGATATCTCCCTGT
TGCGCCAGCTTCATTTGTTGAAAATGTTGTCTTTCTTCTCCTGGATGGCC
TTAGCCTCCCTTGTCCCCCACTAAGCGACCACAGGTGCGCTGAGTTCCTT
TCGGGCATCTTCAATTACTATTCCAACGCTGAACCTTGGCCGTCTACTAT
TCCTGTTACATGCCCTGTTTTATTCTCCTTTGCCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_h18.b1 MSMg01no092_h18.b1 CHROMAT_FILE:
MSMg01no092_h18.b1 PHD_FILE: MSMg01no092_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:21 2005
         (137 letters)



>mm_chr4_59856789_59857325
          Length = 537

 Score =  226 bits (117), Expect = 3e-64
 Identities = 132/137 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctatatacagcacaatttttgtggaactgtggggcttctgttccctagagtaatgcaac 60
           |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct: 201 gctatatacagcacaatttttgtggaacggcggggcttctgttccctagagtaatgcagc 260

                                                                       
Query: 61  catgtgcatgagctctgcacttaggctgcaacacatggatgcagttttaaatttgatgac 120
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtgcacgagctctgcacttaggctgcaacacatggatgcagttttaaatttgatgac 320

                            
Query: 121 agctcatcttactgtaa 137
           |||||||||||||||||
Sbjct: 321 agctcatcttactgtaa 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)