Query= MSMg01no093_a05.b1 MSMg01no093_a05.b1 CHROMAT_FILE:
MSMg01no093_a05.b1 PHD_FILE: MSMg01no093_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:04 2005
(183 letters)
>mm_chr4_134150526_134151108
Length = 583
Score = 199 bits (103), Expect = 7e-56
Identities = 121/127 (95%)
Strand = Plus / Minus
Query: 18 ttcttacgcatgctaccccagccactgtgaattcttacccccgctaccccagccaccgtg 77
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct: 383 ttcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtg 324
Query: 78 aattcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactg 137
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 323 aattcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactg 264
Query: 138 tgaattc 144
|||||||
Sbjct: 263 tgaattc 257
Score = 194 bits (100), Expect = 4e-54
Identities = 112/116 (96%)
Strand = Plus / Minus
Query: 60 gctaccccagccaccgtgaattcttacccatgctaccccagccactgtgaattcttaccc 119
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 372 gctaccccagccactgtgaattcttacgcatgctaccccagccactgtgaattcttacgc 313
Query: 120 atgctaccccagccactgtgaattcttacccatgctaccccagccactgtgaattc 175
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 312 atgctaccccagccactgtgaattcttacgcatgctaccccagccactgtgaattc 257
Score = 180 bits (93), Expect = 5e-50
Identities = 108/113 (95%)
Strand = Plus / Minus
Query: 1 accccagccactgtgaattcttacgcatgctaccccagccactgtgaattcttacccccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 369 accccagccactgtgaattcttacgcatgctaccccagccactgtgaattcttacgcatg 310
Query: 61 ctaccccagccaccgtgaattcttacccatgctaccccagccactgtgaattc 113
||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 309 ctaccccagccactgtgaattcttacgcatgctaccccagccactgtgaattc 257
Score = 178 bits (92), Expect = 2e-49
Identities = 101/104 (97%)
Strand = Plus / Minus
Query: 80 ttcttacccatgctaccccagccactgtgaattcttacccatgctaccccagccactgtg 139
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ttcttacgcatgctaccccagccactgtgaattcttacgcatgctaccccagccactgtg 324
Query: 140 aattcttacccatgctaccccagccactgtgaattcttacgcat 183
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 323 aattcttacgcatgctaccccagccactgtgaattcttacgcat 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space: 100625
Effective search space used: 100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no093_a05.g1 MSMg01no093_a05.g1 CHROMAT_FILE:
MSMg01no093_a05.g1 PHD_FILE: MSMg01no093_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:05 2005
(274 letters)
>mm_chr4_134014156_134014829
Length = 674
Score = 495 bits (256), Expect = e-144
Identities = 268/272 (98%)
Strand = Plus / Plus
Query: 1 ttcccgaatgtggaggttacaggcacagccaccaccagttcatactgctcacctctcgtt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttcccgaatgtggaggttacaggcacagccaccaccagttcatactgctcacctcttgtt 260
Query: 61 tgtattttgctcattcggagaagactggctggaggaagcggtggaaagcaatcacccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtattttgctcattcggagaagactggctggaggaagcggtggaaagcaatcacccagc 320
Query: 121 tacttcgttacagaaatggccccagttgaggcgacaagactctccatgcaaggtggtgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttcgttacagaaatggccccagttgaggcgacaagactctccatgcaaggtggtgtc 380
Query: 181 ctgagttagatcttggaacatattaaaaaagagagagagagaccccaacaggaagatgga 240
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagttagatcttggaacagaaaaaaaaagagagagagagaccccaacaggaagatgga 440
Query: 241 ggagccagctcaagccagccgttcagttaaca 272
||||||||||||||||||||||||||||||||
Sbjct: 441 ggagccagctcaagccagccgttcagttaaca 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
