BAC Information

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BAC

Clone NameMSMg01-094C18
Chromosome4 (Build37)
Map Location 21,530,719 - 21,531,039
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094C18.T7 (MSMg01no094_c18.b1)MSMg01-094C18.TJ (MSMg01no094_c18.g1)
ACCAG311416AG311417
length698694
length of high quality
(start - end)
318 (42 - 359)550 (74 - 623)
definitionCHROMAT_FILE: MSMg01no094_c18.b1 PHD_FILE: MSMg01no094_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:42 2005CHROMAT_FILE: MSMg01no094_c18.g1 PHD_FILE: MSMg01no094_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTCACACAGCTTTTAATTTTTAATATTTATTTATTTATTTATTTTTAG
GTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGGAACACA
CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCT
CCCAAGTGCTGGGATTAAAGGCGAGCGCCACTTAGATTGCTCATGTGATA
TAATTTTAGACTAGGAGTTAGAGTTCAGTCTTCTGGGCTGAAGTTCAGTG
GAGATGGAAAGACTGGCTGCCTTTCTTCCTTCTTCCTTAGAATATTCTAA
GTGTTATATTCTGACCCCTGACCCGCCGCCCTGGTAGCAGAGAGATGGCA
GGCCGGAGGACCGCCCCCAAGAGCTGTGTTGTATGGCAGGTGAATAAAGA
GTAAGGCAGAACCTTACAGCCCTTTTGTGAAAAGTGAAATATGCTTCATT
TTTAATCTACTGCTGATCATAGACTCATCTACTGTCAACCTACTGTGTTC
TGTGCGATCACCGACTTGTAGCTCCCTGCCTTTGCCGATTACCTGTTTCA
ACTAGATACTCTTCAAAGGTTATCTTCATCTTACTCCCTTGCTACAAAAT
ACTTGCTCAACTAATTGGTGAACAAAAGTTTACCACATAATCTTCCCT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGATGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTTAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATTTATCCAGAAGATGCCCCAACTGGTAAGGAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATTCCCAAGATATAATGTACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_c18.b1 MSMg01no094_c18.b1 CHROMAT_FILE:
MSMg01no094_c18.b1 PHD_FILE: MSMg01no094_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:42 2005
         (318 letters)



>mm_chr4_21530329_21531046
          Length = 718

 Score =  563 bits (291), Expect = e-165
 Identities = 310/321 (96%), Gaps = 8/321 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtcacacagcttttaatttttaa--------tatttatttatttatttatttt 56
           |||||||||||||||| |||||||||||||        ||||||||||||||||||||||
Sbjct: 711 gaattctgtcacacagtttttaatttttaatatttatttatttatttatttatttatttt 652

                                                                       
Query: 57  taggtttttcgagacagggtttctctgtgtagccctggttgtcctggaacacactctgta 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 taggtttttcgagacagggtttctctgtgtagccctggttgtcctggaacacactctgta 592

                                                                       
Query: 117 gaccaggctggcctcgaactcagaaatctgcctgcctctgcctcccaagtgctgggatta 176
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 591 gaccaggctggcctcgaactcagaaatctgcctgcctctgtctcccgagtgctgggatta 532

                                                                       
Query: 177 aaggcgagcgccacttagattgctcatgtgatataattttagactaggagttagagttca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaggcgagcgccacttagattgctcatgtgatataattttagactaggagttagagttca 472

                                                                       
Query: 237 gtcttctgggctgaagttcagtggagatggaaagactggctgcctttcttccttcttcct 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gtcttctgggctgaagttcagtggagatggaaagactggctgcctttcttccttcttcct 412

                                
Query: 297 tagaatattctaagtgttata 317
           |||||||||||||||||||||
Sbjct: 411 tagaatattctaagtgttata 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)