BAC Information

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BAC

Clone NameMSMg01-094K02
Chromosome4 (Build37)
Map Location 13,807,515 - 13,807,754
singlet/doubletsinglet
Overlap geneRunx1t1
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094K02.T7 (MSMg01no094_k02.b1)MSMg01-094K02.TJ (MSMg01no094_k02.g1)
ACCAG311744AG311745
length749752
length of high quality
(start - end)
243 (188 - 430)39 (132 - 170)
definitionCHROMAT_FILE: MSMg01no094_k02.b1 PHD_FILE: MSMg01no094_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:22 2005CHROMAT_FILE: MSMg01no094_k02.g1 PHD_FILE: MSMg01no094_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNTTTTNNNCCCCCCCNCCCNNNNCCCCCNNNCCTT
GTAATTACACCTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCAAGGCCTTCCTAGGCTACACAGTAGGACCCTT
TATATAAAATAAATAACGGAATAGATGGTGCAGTTCAACTTTTTCTTGTC
ATTTCTTGAGTAATACAGATATCTGTTTCTACAGTCCAAATCACACAGAT
CTTTTTAAGAGAGCCTTGCCATTTCTATGTTTTAAGATGTTTTGTGTCTA
CTTCAGACAGAGTAGCTTGATACAACCAACTGTTGCACTGGACAAATAAA
AGGGAGTCTCACCTCAATCCACAACAATAAGACCTGACTGAAAACACACA
ACGTATCCAATTCGCTTTACTGTTTTGTCTGCAGTTGAGGTGCAAAGATT
CATCCAATGTTCAACAGATGATTGACCACCAAAACAAGTACTTTCCATTA
ATAAAAAATAATAATAACCGTTCAAATTAACAAGGGAAAATACCCTCCTT
GTGAATTAGCTTATCCTAATTTTCATCTTTATTTCAAGCAAAATGACAAC
GATTAATTGAAAATTTAATACTCAGCAATTATTAACTTCTGGTAACCTAC
TACTAATTAATACTCTTATCAATATTAATTATGACTTGCCTTTATTCCAG
CGTTCGCTCTCTTCTTGTTTTCCCCACTTTTAATTAGTACCTCTATTTA
TTTTTTATTTCTCTTCTACCCTCCCCCCCACACCTTATTTTTTTCNCCCC
CNNCCCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGGAGTGAGGTGGAGG
ATTGCAGGAGACCAAAATTATTTAGCCCCAGGAAACACTGCAGCAATCAC
CAGAGTGAATGGAGTATAAATGGCTTGCTTTCCCATAAAAATTCCCAGCA
TACACTGCTATAGCATCAGTACCCTGTCTTAAAGTTAAAGCAAAAAAGAC
TATGAGTCTTACTGTGTGCAATAAGGCAGAATCAATGATTGACTATCGCT
CATGGCATCCATTTAAAAAAGAAAAATAGTGCTGCTATTTTCAAAAATCC
TCTGGCAAAACTGTGTTTCAAAAACTAAATATCTCATACTACATTAACAG
ACCAAAGGTGGCTTTAATTGGGTACCTATCACACCCTACTATCTAAATGA
ATTTCCTACTCCATTAAAACAACAATGATTTAAACTCCATAGCAGAAGCT
GCCCAGGTGTTTACCCTGCCACCCTAATCATGCCTGGAAGATGGCTGGAT
CTTTTGTTAGGTGTCTGCTTCAGTAGCTCAATTTGCCCTTGTTCCTTTTA
GAAATTTTGATGCACAATGATACGGGAATGCCTTTTGAATCAACTTTCCT
ATCACGTCTTCTCATAACCTGTGCGTATACACGTCTAATTCCGTAGCGGC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_k02.b1 MSMg01no094_k02.b1 CHROMAT_FILE:
MSMg01no094_k02.b1 PHD_FILE: MSMg01no094_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:22 2005
         (243 letters)



>mm_chr4_13807315_13807957
          Length = 643

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttttcttgtcatttcttgagtaatacagatatctgtttctacagtccaaatcacaca 60
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 440 actttttcttgtcatttcttgaataatacagatatctgtttctacagtgcaaatcacaca 381

                                                                       
Query: 61  gatctttttaagagagccttgccatttctatgttttaagatgttttgtgtctacttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatctttttaagagagccttgccatttctatgttttaagatgttttgtgtctacttcaga 321

                                                                       
Query: 121 cagagtagcttgatacaaccaactgttgcactggacaaataaaagggagtctcacctcaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagagtagcttggtacaaccaactgttgcactggacaaataaaagggagtctcacctcaa 261

                                                                       
Query: 181 tccacaacaataagacctgactgaaaacacacaacgtatccaattcgctttactgttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 260 tccacaacaataagacctgactgaaaacacacaacgtatccaattcgctttacagttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)