BAC Information

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BAC

Clone NameMSMg01-095D15
Chromosome4 (Build37)
Map Location 83,280,148 - 83,280,431
singlet/doubletsinglet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D15.T7 (MSMg01no095_d15.b1)MSMg01-095D15.TJ (MSMg01no095_d15.g1)
ACCAG312191AG312192
length694708
length of high quality
(start - end)
44 (46 - 89)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no095_d15.b1 PHD_FILE: MSMg01no095_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:10 2005CHROMAT_FILE: MSMg01no095_d15.g1 PHD_FILE: MSMg01no095_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATTCGGAGTGGAGCCGCGGAATTCAAGGTGTGTCACAACAATACCCT
GCCCAAACTTTCTTTCTTTTTTTAAAAAGAGGATCTTCTATTATCATTAT
TATTATTATTATTATTATTATTATTATGTGTATAACTACATGGTAGTTAT
CTTTAGACACACAGAAAGGGCATTAGACCCCATTACAGATGGTTGTGAGC
CACCATGTGGTTGCTGGCAATTGAACTCAGGACCTCTGGAAGAGTAGTAA
GTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCAATTTTACTCATTTA
TTAGACTTTAAGAGCGCTTTTTATATTTTTTTTTTTTTCTCCCCCCCCCC
CGGCCTTGTGTAAAAATATATTAGAAACCACTAGCTACCCCAAAAGAAAA
ATAATATGCCTCTCATCCCTGCACCCGTGAGTTATACCCAGACCAATTTC
TGATTTCTATGCCTGTCTGCTCTACTACCTGTTGCTCGACCACGTTTAGA
TCTTCTCCTAGTTACCCTGACTTAAATACTCGTACTACGTTTAATTCAGC
TCACCATTGTATTTCTTCTTCCCCTTCTAAAGATAATGCTCCACCACCTT
TTTTATATATAACAAGTTATGACCCCGCTTCACCTTTTTTATTTTCTTTT
TAATAAACCCCCCCCTCTATATGGTATATTTTTTGGCCCATTGT
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGTTTGCTCAAATTTCAGGGAAGGC
CAGTCCCTGGCCCCAGCTTGGTGCCTGGTAACAGGTCTTAAGCGAATATG
TGAAAATGAGCAGTTTTGTGACAGGCAGCTACCTGTCTGACAGCCACTAC
CGCAGAGCCAGGGGTGCATATGGGAATCACTTACAGGCACTGTCTAAGAC
TCACCGTTAGTGTGTTTGCTGGGGAGGGGAAAGAGCCCAGACAGTCTTCA
GGAACTCTGGCATCTCTAGCCTACTCAGAAGAAGAAAGGGGAAAACTGGA
AAGTGTCTCTTTATGCCCACCACCGCCTGACAGAGAGTTTCAATTGTGCT
CCTTGCTACTTAAAGGCCAAGCAAAAGGACTATGAGCTGCCCACTGGGCA
CGGCATCATTACTGACTTTAAAGAAATGTCTTTGGCCTACCCCATCCAGG
GATCCATACCATAATCAGCCACCAAACGCACACACTATTGCAGATGCCAG
CAAGATTTTGCTGACATGACCCTGATGTAGCTGTCTCTCGCTATGACTGT
GCCTGGCAAATATTGAAGTGTATGCTCACTGTCCTCTATTGTACGGTACC
CACTGGACCTCCCTGTAGAATCTAAATAAATCTCCCTATGAGTTGACGGT
TTCTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d15.g1 MSMg01no095_d15.g1 CHROMAT_FILE:
MSMg01no095_d15.g1 PHD_FILE: MSMg01no095_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:11 2005
         (287 letters)



>mm_chr4_83279948_83280634
          Length = 687

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtttgctcaaatttcagggaaggccagtccctggccccagcttggtgcctggtaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agtgtttgctcaaatttcagggaaggccagtccctggccccagcttggtgcctggtaaca 425

                                                                       
Query: 61  ggtcttaagcgaatatgtgaaaatgagcagttttgtgacaggcagctacctgtctgacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggtcttaagcgaatatgtgaaaatgagcagttttgtgacaggcagctacctgtctgacag 365

                                                                       
Query: 121 ccactaccgcagagccaggggtgcatatgggaatcacttacaggcactgtctaagactca 180
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 364 ccactaccgcagagccaggggtgcatatgggaatcacttagaggcgctgtctaagactca 305

                                                                       
Query: 181 ccgttagtgtgtttgctggggaggggaaagagcccagacagtcttcaggaactctggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ccgttagtgtgtttgctggggaggggaaagagcccagacagtcttcaggaactctggcat 245

                                                       
Query: 241 ctctagcctactcagaagaagaaaggggaaaactggaaagtgtc 284
           |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 244 ctctagccaactcagaagaagaaaggggaaaactggaaagtgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)