AAAGATCCGCGGAATTCTTAGTTATTTCATTTAGTTTCCTTTGACCTCAA
GATTTGAATCAAAGCCAAATTATTGAAAGCTAATTTTTCTCATTTCTAAA
ATGTGCTATCTATTCTAAAATCTAATCTGAATAAATCATCTCTTCAAGCT
TTGGCTTATTTATTTGAATAGACAAATAATAATACTTCCTTTGGAATTCA
TGTGAGAAAATGTTTAGATCAACAGTCCCTAAGAATGTTCTTTAACGTGC
TAATTACAGACTATATAAATAGATATTCTAGGACAAAATAACATCATCAA
ATGTATTTGCAAATTGTTAAGTATACTAAGCAAAATAACACATATTTATT
TAAGCTAGAACTTTATATAGCAATGTGAATTTTAAATTATGTATGCATAT
ATACATGCATATATATGTAAATATAAACTTAGTGACTGCTAAATATATTG
GCCATAAAATTTATGGCACCCAGGACCTTCAAAACAAAAACTCAAACTGG
GGAGATCGAGGGAGGGGTTATAAAAAAGGAAGAGAAAGAGAGAGAGAATG
TAGTTTCTTTATATTTTTTACACTGAACTGATTCAGATAACATCTGGAGT
CAAAAGTTCAAAATCAATCCCCAAAATTGAGTTGCTGTTTATTCCCCATT
CTGGGTTATCACTCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTATACTTGGGTTATCAAGCATTCACAGGACCAAGGGCCTCTCCTCC
CATTGATGCCCAACAAGGCCATCCTCTGCTACATATGCAGCTGGTGCCAT
GAGTCCCTCTATATGTACTCTTTGGTTGGTGGTTTAGTCCCTAGGAGCTC
TGGGAGATCTGGTAGGTTGATATTTTGTTCTTCCTATGGGGTTGCAAACA
CCTTCAGTTCCTTCAGTCTGTTTTCTAAGTACTCCATCGGGGACCCCATG
CACAGTCGAATGGTTGACTGAGAAAACACCTCTGTACTTGTCAGGCTCTG
TCAGAGTCTCTCAGGGGACAGCTATATCAGGCTCTTGTTAGTAAGCACTT
CTTCACATCAACAACAGCTTCTGGGCTTAGTGACTGTGTATGAGATAGAT
TCCCAAGTTGGGCAGTCTCTGCATGGCCTGTCCTTCAGTCTCTGCTCCAC
ACTTTGTCTCTGTATTTGCTTTCATGAGTATTTTGTTCCCCTTTCTAAGG
ATAGAAACACCCACACTTTGGTCTTCCTTCTTCTTGAGCTTCATGTGATC
TATGAATTGTATTTTGGCTATTCCAAGCTTCTGGGTCAATATCCCCATAT
CAGTGAGTGCATATCATGCGTGTTCTTTTGTGACTG

Query= MSMg01no095_h13.b1 MSMg01no095_h13.b1 CHROMAT_FILE:
MSMg01no095_h13.b1 PHD_FILE: MSMg01no095_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:30 2005
         (559 letters)



>mm_chr4_68244313_68245271
          Length = 959

 Score = 1042 bits (539), Expect = 0.0
 Identities = 554/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcttagttatttcatttagtttcctttgacctcaagatttgaatcaaagccaaatta 60
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aattcttagttattttatttagtttcctttgacctcaagatttgaatcaacgccaaatta 260

                                                                       
Query: 61  ttgaaagctaatttttctcatttctaaaatgtgctatctattctaaaatctaatctgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaagctaatttttctcatttctaaaatgtgctatctattctaaaatctaatctgaat 320

                                                                       
Query: 121 aaatcatctcttcaagctttggcttatttatttgaatagacaaataataatacttccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcatctcttcaagctttggcttatttatttgaatagacaaataataatacttccttt 380

                                                                       
Query: 181 ggaattcatgtgagaaaatgtttagatcaacagtccctaagaatgttctttaacgtgcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaattcatgtgagaaaatgtttagatcaacagtccctaagaatgttctttaacgtgcta 440

                                                                       
Query: 241 attacagactatataaatagatattctaggacaaaataacatcatcaaatgtatttgcaa 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 attacagactatataaatagatattctaggataaaataacatcatcaaatgtatttgcaa 500

                                                                       
Query: 301 attgttaagtatactaagcaaaataacacatatttatttaagctagaactttatatagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgttaagtatactaagcaaaataacacatatttatttaagctagaactttatatagca 560

                                                                       
Query: 361 atgtgaattttaaattatgtatgcatatatacatgcatatatatgtaaatataaacttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgaattttaaattatgtatgcatatatacatgcatatatatgtaaatataaacttag 620

                                                                       
Query: 421 tgactgctaaatatattggccataaaatttatggcacccaggaccttcaaaacaaaaact 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 621 tgactgctaaatatattggccataaaatttatggcactcaggaccttcacaacaaaaact 680

                                                                       
Query: 481 caaactggggagatcgagggaggggttataaaaaaggaagagaaagagagagagaatgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaactggggagatcgagggaggggttataaaaaaggaagagaaagagagagagaatgta 740

                              
Query: 541 gtttctttatattttttac 559
           |||||||||||||||||||
Sbjct: 741 gtttctttatattttttac 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)