Query= MSMg01no095_j01.b1 MSMg01no095_j01.b1 CHROMAT_FILE:
MSMg01no095_j01.b1 PHD_FILE: MSMg01no095_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:37 2005
(552 letters)
>mm_chr4_120833732_120834683
Length = 952
Score = 965 bits (499), Expect = 0.0
Identities = 544/565 (96%), Gaps = 14/565 (2%)
Strand = Plus / Minus
Query: 1 aacaggagcatagaaattctaggtgtagctttagattgagattttgttaaacagaaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aacaggagcatagaaattctaggtgtagctttagattgagattttgttaaacagaaaacc 528
Query: 61 atctgatcagattaaaggcacaagctaccactcatggctttaaaattataatcttaatac 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 527 atctgatcagattaaaggcacgagctaccactcatggctttaaaattataatcttaatac 468
Query: 121 ttatatttttt--------tcatatggggaattaagtatactcaagaaatacactaagtc 172
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ttatattttttccatatggtcatatggggaattaagtatactcaagaaatacactaagtc 408
Query: 173 tgtgaagaatttaagacttaaatatttaagtgttttactcctagagtagagttcttctaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgtgaagaatttaagacttaaatatttaagtgttttactcctagagtagagttcttctaa 348
Query: 233 aatagttttttgtttgtttgttttttcgagacagggtttctctgtgtagccctggctgtc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aatagttttttgtttgtttgttttttcgagacagggtttctctgtgtagccctggctgtc 288
Query: 293 ctggaactcactttgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcct 352
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 287 ctggaactcactttgtagaccaggctggcctcaaactcagaaattcgcctgcctctgcct 228
Query: 353 cccgagtgctgggattaaaggc-atgcgccaccacgcccggcctaaaatagtttttaagc 411
|||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 227 cccgagtgctgggattaaaggcga-gcgccaccacgtccggcctaaaatagtttttaagc 169
Query: 412 caaggcttcgtgtctgctagagggtca-gctaccacggcgctgtaaccacagccccaaac 470
||||||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct: 168 caaggcttcatgtctgctagagggtcaagctaccacagtgctgtaaccacagccccaaac 109
Query: 471 agttctgaataggcatcttcctagggtttgatatgagttccgactttgttgttgttgttg 530
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 108 agttctgaataggcatcttcctagggtttgatatgagttcggactttgttgttgttgttg 49
Query: 531 ttgtt---tgttttgtttgctttgg 552
||||| |||||||||||||||||
Sbjct: 48 ttgttgtttgttttgtttgctttgg 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_j01.g1 MSMg01no095_j01.g1 CHROMAT_FILE:
MSMg01no095_j01.g1 PHD_FILE: MSMg01no095_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:37 2005
(577 letters)
>mm_chr4_120685126_120686102
Length = 977
Score = 1085 bits (561), Expect = 0.0
Identities = 573/577 (99%)
Strand = Plus / Plus
Query: 1 aagaaggaagatcaggagttcatttaatcagctacaggtcaaagccagcctgtttcaaac 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aagaaggaagatcaggagttcatttaatcagctacaggtcaaggccagcctgtttcaaac 260
Query: 61 ataggacaagggcaggtaagaaatggccaacagtggttatactcaggaagagaacaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggacaagggcaggtaagaaatggccaacagtggttatactcaggaagagaacaaagg 320
Query: 121 tggctatgggtcaccttaggacaatgatttttcattctgttgtcttttcgattttttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctatgggtcaccttaggacaatgatttttcattctgttgtcttttcgattttttttg 380
Query: 181 aatttcaaaccacatgaaatctacttaagtgaaaatatatagagaagatgaaacagaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttcaaaccacatgaaatctacttaagtgaaaatatatagagaagatgaaacagaggc 440
Query: 241 agtggttaggtaattagaggggaaacatttcatagacaagatgtaatggaaggggaccgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggttaggtaattagaggggaaacatttcatagacaagatgtaatggaaggggaccgg 500
Query: 301 gaaaaactaacaaagctctcaagacagcagagctgcacgaggcgcttcagtgtcactcat 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gaaaaactaacaaagctctcaagacagcagagctgcacgaggcacttcagtgtcactcat 560
Query: 361 atgttccctgacactgtcatgtctcccatgtctactctctgctcattaaacggctctctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttccctgacactgtcatgtctcccatgtctactctctgctcattaaacggctctctg 620
Query: 421 cttctcccaaaccttgacgctggtaacgtctcaatggtgcacaggagtacgcaggtcatc 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 cttctcccaaaccttgacgctggtaatgtctcaatggtgcacaggagtacgcaggtcatc 680
Query: 481 agaaaggtggaccctccgacaccagtctctgaatgggttaatgccaacacattcataaac 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaaggtggaccctctgacaccagtctctgaatgggttaatgccaacacattcataaac 740
Query: 541 atctggagctgcagagctaaaggcccagccttgggct 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 741 atctggagctgcagagctaaaggcccagccttgggct 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
