Query= MSMg01no095_p01.b1 MSMg01no095_p01.b1 CHROMAT_FILE:
MSMg01no095_p01.b1 PHD_FILE: MSMg01no095_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:07 2005
(609 letters)
>mm_chr4_98749068_98750076
Length = 1009
Score = 1094 bits (566), Expect = 0.0
Identities = 599/610 (98%), Gaps = 2/610 (0%)
Strand = Plus / Plus
Query: 1 tgggtgccaggaaccaaacttgtgtctcctacaacagcagcaagtgctcagaactgctga 60
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct: 201 tgggtgccaggaaccaaacttgtgtctcctacaacagcagcaagtgttcataactactga 260
Query: 61 gtcgtctctcagcctctgctcaggactgtacattatcatagtaaacaagagacttacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcgtctctcagcctctgctcaggactgtacattatcatagtaaacaagagacttacttt 320
Query: 121 ctgaccacaactgcccagtcttctgtgtaacttcttatacaatctctaacatgtgggtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaccacaactgcccagtcttctgtgtaacttcttatacaatctctaacatgtgggtcc 380
Query: 181 atttcactgtttaaaacacaacaaaatatacttataatttaggcagaaaagtagaatgta 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 atttcactgtttaaaacacaacaaaatatacttataattcaggcagaaaagtagaatgta 440
Query: 241 cc-agagttattattattagaaggatccaaagggtccaagggaagaatacaacaatgaat 299
|| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 441 cccagagttattattattagaaggatccaaaaggtccaagggaagaataccacaatgaat 500
Query: 300 ttaattaacattttgtagtgtttcttttttatataataagaaataccataaacatatggc 359
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ttaatgaacattttgtagtgtttcttttttatataataagaaataccataaacatacggc 560
Query: 360 ttaagtaaagtaatgaaaatcatcttcctatagttaacactgaagctaaaacatggtgat 419
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 ttaagtaaagtaatgaaaatcatcttcctatagtta-cactgaagctaaaacatggtgaa 619
Query: 420 tgtctccttacctttcttcaggcacagctgaaacaagggtcctgcagtccctaggactat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtctccttacctttcttcaggcacagctgaaacaagggtcctgcagtccctaggactat 679
Query: 480 acacaacttcaatatcatctggaggaaattcaaccaaatcccgcaaaggcccggaatccc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acacaacttcaatatcatctggaggaaattcaaccaaatcccgcaaaggcccggaatccc 739
Query: 540 cagacaacgggtgagtgacgaggtaatcttccaagtccacaggatcgactgcttcggtaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cagacaacgggtgagtgacgaggtaatcttccaagtccacaggatcgactgcttcggtaa 799
Query: 600 ggggcacctt 609
||||||||||
Sbjct: 800 ggggcacctt 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_p01.g1 MSMg01no095_p01.g1 CHROMAT_FILE:
MSMg01no095_p01.g1 PHD_FILE: MSMg01no095_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:07 2005
(589 letters)
>mm_chr4_98866708_98867696
Length = 989
Score = 861 bits (445), Expect = 0.0
Identities = 476/491 (96%), Gaps = 8/491 (1%)
Strand = Plus / Minus
Query: 107 aaagcagaaaccatgacgaaacatcgactgctggcttgcttctctacaccacacacaaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 aaagcagaaaccatgacgaaacatcgactgctggcttgcttctctacaccacacacaaat 930
Query: 167 acctgccctacagtagcactgcccagtgggacgggccctcccacatcaattatcaatcaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 acctgccctacagtagcactgcccagtgggacgggccctcccacatcaattatcaatcaa 870
Query: 227 ggaaacttcctgcacatacccataggtcagtctattgaagg--------caactcctcaa 278
|||||| ||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct: 869 ggaaaccacctgcccatgcccataggtcagtctattgaaggcaactcctcaactcctcaa 810
Query: 279 ctgaggttccctcttcccaggcaacaataaagctaaccaggacacccagaacctaattgt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ctgaggttccctcttcccaggcaacaataaagctaaccaggacacccagaacctaattgt 750
Query: 339 tatgaggtgataagacttatcaattctgtgaggtactctcggcaaaaataattggtttgt 398
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 749 tatgaggtgataagacttatcaattctgtgaggtactctcagcaaaaataattggtttgt 690
Query: 399 actcacaaaaaatatcaattgactttaaagatgaggacagaagagaaggagggagcaagc 458
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 689 actcacaaaaaatatcaattgactttaaaaatgagaacagaagagaaggagggagcaagc 630
Query: 459 aggagagggggagaagatgttctctgtaaaaaaagaaaagagagacggctgggagaagca 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aggagagggggagaagatgttctctgtaaaaaaagaaaagagagacggctgggagaagca 570
Query: 519 actgcccacacgcacaggccagatgccctaggtctgcgttccagcactgcaaaaggataa 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 actgcccacacgcacaggccagatgccctaggtctgcgttccagcactgcaaaaggataa 510
Query: 579 agagaagagaa 589
|||||||||||
Sbjct: 509 agagaagagaa 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
