Query= MSMg01no096_a06.b1 MSMg01no096_a06.b1 CHROMAT_FILE:
MSMg01no096_a06.b1 PHD_FILE: MSMg01no096_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:13 2005
(508 letters)
>mm_chr4_76990936_76991843
Length = 908
Score = 870 bits (450), Expect = 0.0
Identities = 488/504 (96%), Gaps = 7/504 (1%)
Strand = Plus / Minus
Query: 3 ggaattctcaagggatacccatgcttactcagctcaaaactctgggcattcagggtatgc 62
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggaattctcaagggagacagatgcttactcagctcaaaactctgggcattcagggtatgc 503
Query: 63 tgctggcattagttcaattctgatgaagatgttctagtaacaaagaaggaatggtttaat 122
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 502 tgctggcattagttcaactctgatgaagatgttctagtaacaaaaaaggaatggtttaat 443
Query: 123 agtgagtgatttttgttatcacacagaaattagaaagtgatccagaggtcaaactgttat 182
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agtgagtgacttttgttatcagacagaaattagaaagtgatccagaggtcaaactgttat 383
Query: 183 aataatccaataatcaatggtcccacagaactgtgttaattccttccaagaacagcaccc 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 382 aataatccaataatcaatggtcccacagaactgtgttaattccttccaaggacagcaccc 323
Query: 243 ttaatgacttactaatgtttccagaagttcctgcttcttaaaggtctttccatttcattg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaatgacttactaatgtttccagaagttcctgcttcttaaaggtctttccatttcattg 263
Query: 303 aaaaccaaggctccagtatatgaacctatcgagaacaaaccatatccaaatcatgacacc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaaccaaggctccagtatatgaacctatcgagaacaaaccatatccaaatcatgacacc 203
Query: 363 taaataaaaat--aaaaaaaaataaatgcagatttatttttatccagtgtaatgcattgg 420
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 202 taaataaaaatttaaaaaaaa-----tgcagatttatttttatccagtgtaatgcattgg 148
Query: 421 ctttttcttttctgctaatgttgacatttacacagggtcaattgccagttgatatttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ctttttcttttctgctaatgttgacatttacacagggtcaattgccagttgatatttcca 88
Query: 481 caatagtctcaatctttttttttt 504
| ||||||||||||||||||||||
Sbjct: 87 cgatagtctcaatctttttttttt 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_a06.g1 MSMg01no096_a06.g1 CHROMAT_FILE:
MSMg01no096_a06.g1 PHD_FILE: MSMg01no096_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:13 2005
(491 letters)
>mm_chr4_76840532_76841422
Length = 891
Score = 911 bits (471), Expect = 0.0
Identities = 486/491 (98%)
Strand = Plus / Plus
Query: 1 atgacaatgaacattccatatcataattataaggctgtgcccaactccattgtgcagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgacaatgaacattccatatcataattataaggctgtgcccaactccattgtgcagaag 260
Query: 61 atattttttccactcatcaaaacttatatttatagctaattttattggttttaagctagt 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atattttttccactcatcaaaacttatatttatagctaattttattggctttaagctagt 320
Query: 121 tggctatgatcatgcctggaattagttgatagatgtcatagcctttgcaattgccttatt 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tggctatgatcacgcctggaattagttgatagatgtcatagcctttgcaattgctttatt 380
Query: 181 attttcatattgcttattaaccaataaatattattgatctctaaaatttgctgtttctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttcatattgcttattaaccaataaatattattgatctctaaaatttgctgtttctaa 440
Query: 241 atatatgcttttaatttgaataaaattttaaaaattaatcccttctcaataaaaaaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatatgcttttaatttgaataaaattttaaaaattaatcccttctcaataaaaaaatga 500
Query: 301 gaagtccataaatgaatgtagtatagcaggtattctgcatagcttgcagctgactgcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 gaagtccataaatgaatgtagtatagcaggtattctgcatagcttgcagttgactgcaat 560
Query: 361 aaaagttgaaaaggaaaacaataaaagaagcagagacatgttgattgcttaacgattagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaagttgaaaaggaaaacaataaaagaagcagagacatgttgattgcttaacgattagt 620
Query: 421 gctcttctggaggctgtattttctactatgtactatggtgtttaaacttaattctctaat 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcttctggaggctgtattttctactatgtactatggtgtttaaacttaattctctaat 680
Query: 481 gaaagcattaa 491
|||||||||||
Sbjct: 681 gaaagcattaa 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
