BAC Information

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BAC

Clone NameMSMg01-096A16
Chromosome4 (Build37)
Map Location 35,253,437 - 35,419,856
singlet/doubletdoublet
Overlap geneLOC621227
Upstream geneLOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096A16.T7 (MSMg01no096_a16.b1)MSMg01-096A16.TJ (MSMg01no096_a16.g1)
ACCAG312812AG312813
length768797
length of high quality
(start - end)
225 (180 - 404)325 (135 - 459)
definitionCHROMAT_FILE: MSMg01no096_a16.b1 PHD_FILE: MSMg01no096_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:15 2005CHROMAT_FILE: MSMg01no096_a16.g1 PHD_FILE: MSMg01no096_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,419,632 - 35,419,856)(35,253,437 - 35,253,761)
sequence
TTTTTTTTTGTGNTTTTNNTTTTTTTGTGTGCTTCTGTTCTTCCTTACAC
GAAATATCATAAATTGCGGCGCTAAACGACTCACTATTTCGAGAAAACCG
CGGAATTCTCTTTGTTATCCTAAAACTTTCCTGTAAATCTAAAATTATTT
AAAATTTAGAAGTTCATTGTAAATGACCCAGAATGACAAGCAGGAATCTC
CAAAACCCGCTCTGCTATCTCTCTGGGTTACCTGCTAACTGGGTCTGAAG
ACTTCCCTTCTACAGGAAGGGTTATACTTGACTCGGACTTCCCTGTAATA
TCTCCAATAGCTCCTCTTTGGTAGCTGGCGCTTAAGTCAAGACAATTTGG
TATTCTGTCTCAAAATATTTGTCTCCTGTGGTTACTTTCACACTTGTTTC
ATAGAAATGTTCAGCACAGAGTCAGTACCGCTCCTAGATGGCCTTCACGT
TATGCCCAGCTTTGTTCAGACACATAATTTTGATAGGTGAGGAGATAGAG
ATGTCTTCTGAACCTTTCTTTGAATTCTGGTCTGTACTGTGCTTGCCCAA
GTCTACTCTACAATGCCATCATAGTTTATGTTTAAATTTTCTCTTCCCAA
TATGCCTTTATTTTCCCGCTAACAAGTAAAATTTGAACGCCTTAAATTGC
CATACCTCAAAGTCTAAGGACATAATACATTTAATGATCTACTCCTTCTG
AATACTTTCACTGAATAAAACGTTTTTTCAATACTGATTTGCAAGCTCTT
AATCTAACTTTTGACAGG
TTTTTGTGTTTGGGTNTGTGTGTTTTTCTTTTCTTCCTTTTCCTCCTTCT
CCAAACCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATGAGCATCTATCA
TGAAAGAAGCTCTATGTTGGTTGCTAGAAAGGAAACAGAAAAAGAAGCAA
AAACTCAGGAGAAAGAGTGTTTGCAACAGGACCACCTTTTCCAAGTATAC
AGTGGCCAAGGCTCAGGGGCTTCAGCTCCATAATTCCACAAAAATGAACT
TGCCCAACGAGTCAGATGAACTTTCTAGTTAGCCCTTCTGTATGATCTAT
AGTAGGTAGTGCACTTGTCCAGAACTTGGTCTGACAGGTTAGACCCTAGG
AGGTGTCTTTATCAGCATACCTGGTGACGTTAGGAACTATGAGGTGATAC
ATTTGAGTGGTTTTAAGGCACTAAATTTGCTAAAGCATTGATAGGAAACT
AATACAGTGTCCACATTTGAGAGTCCCTATGTGTAGGCCTGGCATTTCCA
CTGATCAGATTTTGTGTACCTCTCTGGTCCTATGGCTCCCTTTAAAAGCC
TCTTTATCTTTAGCCCATCCTCTGGCATCCTATTCCACCATGTAGCTCAT
ATCTGCTCCCGCTACTACTCTATAATCTCTAAAATACCTATACAATTTTC
AATTGTACCTTATACTCGTCCTTCTATTTCTATGGCAAGCCCACCACAAA
GCTTATCTCGACTGCTAAGATGTTTGCTTAAAATCTCTTCTTCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_a16.b1 MSMg01no096_a16.b1 CHROMAT_FILE:
MSMg01no096_a16.b1 PHD_FILE: MSMg01no096_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:15 2005
         (225 letters)



>mm_chr4_35419432_35420056
          Length = 625

 Score =  404 bits (209), Expect = e-117
 Identities = 221/225 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgacaagcaggaatctccaaaacccgctctgctatctctctgggttacctgctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agaatgacaagcaggaatctccaaaacccgctctgctatctctctgggttacctgctaac 366

                                                                       
Query: 61  tgggtctgaagacttcccttctacaggaagggttatacttgactcggacttccctgtaat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 365 tgggtctgaagacttcccttctacaggaagggttacacttgactcggacttccctgtaat 306

                                                                       
Query: 121 atctccaatagctcctctttggtagctggcgcttaagtcaagacaatttggtattctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atctccaatagctcctctttggtagctggcgcttaagtcaagacaatttggtattctgtc 246

                                                        
Query: 181 tcaaaatatttgtctcctgtggttactttcacacttgtttcatag 225
           ||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct: 245 tcaaaatatttgtctccaggggttactttcacacttgttccatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no096_a16.g1 MSMg01no096_a16.g1 CHROMAT_FILE:
MSMg01no096_a16.g1 PHD_FILE: MSMg01no096_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:15 2005
         (325 letters)



>mm_chr4_35253237_35253961
          Length = 725

 Score =  567 bits (293), Expect = e-166
 Identities = 317/325 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgagcatctatcatgaaagaagctctatgttggttgctagaaaggaaacagaaaaag 60
           |||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agatgaacatctatcacgaaagaagctctatgttggttgctagaaaggaaagagaaaaag 260

                                                                       
Query: 61  aagcaaaaactcaggagaaagagtgtttgcaacaggaccaccttttccaagtatacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaaaaactcaggagaaagagtgtttgcaacaggaccaccttttccaagtatacagtg 320

                                                                       
Query: 121 gccaaggctcaggggcttcagctccataattccacaaaaatgaacttgcccaacgagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaaggctcaggggcttcagctccataattccacaaaaatgaacttgcccaacgagtca 380

                                                                       
Query: 181 gatgaactttctagttagcccttctgtatgatctatagtaggtagtgcacttgtccagaa 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gatgaactttctagttagcccttctgtatgatctatagtaggcagtgcacttgtccagaa 440

                                                                       
Query: 241 cttggtctgacaggttagaccctaggaggtgtctttatcagcatacctggtgacgttagg 300
           ||||||||||||||  | |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 cttggtctgacaggggataccctaggaggtgtctttatcagcatacctggtgacattagg 500

                                    
Query: 301 aactatgaggtgatacatttgagtg 325
           |||||||||||||||||||||||||
Sbjct: 501 aactatgaggtgatacatttgagtg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)