BAC Information

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BAC

Clone NameMSMg01-096F01
Chromosome4 (Build37)
Map Location 30,639,576 - 30,713,354
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665185, LOC619906
Downstream geneLOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096F01.T7 (MSMg01no096_f01.b1)MSMg01-096F01.TJ (MSMg01no096_f01.g1)
ACCAG313021AG313022
length634695
length of high quality
(start - end)
585 (31 - 615)431 (69 - 499)
definitionCHROMAT_FILE: MSMg01no096_f01.b1 PHD_FILE: MSMg01no096_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:37 2005CHROMAT_FILE: MSMg01no096_f01.g1 PHD_FILE: MSMg01no096_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,712,771 - 30,713,354)(30,639,576 - 30,640,003)
sequence
AAGATCCGCGGAATTCATTATAATACACAAAAAATAAATAGTAATATGTA
AAATTTTGCTATTACTAAATTGGTCAAGATGAGTTTGGCTTAGTTGTGAC
AATTCTACAAATTTCAGGGGCATAAGAAATAAAGCTGCTGCGTTTGATCA
TTAAAGCCCTCTGTGCATCCTGGGTAGCCACATTCAACTGTTACTGGGGA
ATCCTTTAATCACGTTCTCCCTATATCTCAACTTAGGGCTCTTTCCATAG
TCAACAACGAGACTGAATAAATAGCCAAAGTTTCAATACTTACCCCTAAA
TACTTTAGATCCAAGTGTTATCATTTGCTGATACAATAACTAAAGACCAT
CAACGGCTGAGCTTGAGAGGCACAGAGAGAGTGCAAGCATGCACATGCTC
ATGCAGGTGACAAGTGGTGAAGAACTGAACACATAAACTGAAGCACATCT
GACACATTATGACAGGAAGAACTTGCTCTGAAGTGTTAGCTTTCAAACCG
CTTCTGCTTTTTCAGCTCTGTACTGTTTCCAGGGTTGTTCTGGAGAGCAT
TTATTTTTCGTGAATCATACTGTTTATCGCTAAATTATGACTTTTTTGTT
ATATATTTTATTACTATCGCTGACTTATGAGAAA
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGATCCCATCTGGAAAAGGTGTGAGTGGAG
AGTGGCTTAATTGTCCAGAGGCAAATTGCTTCAGAGTCAAAGGAAATATA
ATATTCTGTGCATAATTTGGCCTACAAACTTTTTGACATTTTTATATCAT
TCACAATCAAGTCATTGTCAAAAAACCAGGTACTTAAACTCCTACAACCT
TATGGATATATTTAGAATAGAGTGGAATAAAAACTTGGTAATATATCAAT
ATGCACAGCTGGAAAGCAGATGTTCAGTTCAATGATCTCAGTACTTGAGA
AAAGTATTAAACCTGTAACTCACTTGAAAAAAATCCCCATAATTTATTGT
CCTCATTTTTGGCTCTTCTTCCAAATTAACTCTAGAAATATTTCTGTTGC
TATTGTTGTTGTTGTTGAAACCAATTAAACAACCAGGAAAGTTTGACTGC
GTACACTGTATTAGCTGAGTGCTAACAAATGCCCAAGGCATATGTCAATC
AAATTAAACTATGAGTTATGAGCTGTTTACAGAAGTGATGAATGTGTACA
GCTATTATTACACGATCACTACTATTGGATACCCATCATTTTGCCAGATC
GCCATCCCTCTATCACAGGCCCAAGGCCTGATTTAACTTGTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_f01.b1 MSMg01no096_f01.b1 CHROMAT_FILE:
MSMg01no096_f01.b1 PHD_FILE: MSMg01no096_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:37 2005
         (585 letters)



>mm_chr4_30712571_30713554
          Length = 984

 Score =  971 bits (502), Expect = 0.0
 Identities = 566/588 (96%), Gaps = 7/588 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaataaatagtaatatgtaaaat-tttgctattactaaattggtcaagatgagtttggc 59
           ||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||
Sbjct: 784 aaaataaatagtaatatgtaatatgtgtgttattactaaattggtcaagatgagtttggc 725

                                                                       
Query: 60  ttagttgtgacaattctacaaatttcaggggcataagaaataaagctgctgcgtttgatc 119
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 724 ttagttgtgacaattctacaaatttcaggggcataagaaatagagctgctacgtttgatc 665

                                                                       
Query: 120 attaaagccctctgtgca-tcctgggtagccacattcaactgttactggggaatccttta 178
           |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 664 attaaagccctctgtg-agtcctgggtaaccacattcaactgttactggggaatccttta 606

                                                                       
Query: 179 atcacgttctccctatatctcaacttagggctctttccatagtcaacaacgagactgaat 238
           ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct: 605 atcacgttctccctatatctcaatttagggctctttccatagtccacaatgagactgaat 546

                                                                       
Query: 239 aaatagccaaagtttcaatacttacccctaaatactttagatccaagtgttatcatttgc 298
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 545 aaatagccaaagtttcaatacttactcctaaatactttagatccaagtgttatcatttgc 486

                                                                       
Query: 299 tgatacaataactaaagaccatcaacggctgagcttgagaggcacagagagagtgcaagc 358
           |||||||||||||||||| |||||||||| |||||||||| ||||||||||  |||||||
Sbjct: 485 tgatacaataactaaagatcatcaacggccgagcttgagatgcacagagag--tgcaagc 428

                                                                       
Query: 359 atgcacatgctcatgcaggtgacaagtggtgaagaactgaacacataaactgaagcacat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atgcacatgctcatgcaggtgacaagtggtgaagaactgaacacataaactgaagcacat 368

                                                                       
Query: 419 ctgacacattatgacaggaagaacttgctctgaagtgttagc-tttcaaaccgcttctgc 477
           ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 367 ctgacacattaggacaggaagaacttgctctgaagtgttagccttt-aaaccgcttctgc 309

                                                                       
Query: 478 tttttcagctctgtactgtttccagggttgttctggagagcatttatttttcgtgaatca 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 308 tttttcagctctgtactgtttccagggttgttctggagagcatttattttttgtgaatca 249

                                                           
Query: 538 tactgtttatcgctaaattatgacttttttgttatatattttattact 585
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tactgtttatcgctaaattatgacttttttgttatatattttattact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space:   560050
Effective search space used:   560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no096_f01.g1 MSMg01no096_f01.g1 CHROMAT_FILE:
MSMg01no096_f01.g1 PHD_FILE: MSMg01no096_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:37 2005
         (431 letters)



>mm_chr4_30639372_30640203
          Length = 832

 Score =  804 bits (416), Expect = 0.0
 Identities = 425/428 (99%), Gaps = 1/428 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   atcccatctggaa-aaggtgtgagtggagagtggcttaattgtccagaggcaaattgctt 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atcccatctggaacaaggtgtgagtggagagtggcttaattgtccagaggcaaattgctt 264

                                                                       
Query: 64  cagagtcaaaggaaatataatattctgtgcataatttggcctacaaactttttgacattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagagtcaaaggaaatataatattctgtgcataatttggcctacaaactttttgacattt 324

                                                                       
Query: 124 ttatatcattcacaatcaagtcattgtcaaaaaaccaggtacttaaactcctacaacctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatatcattcacaatcaagtcattgtcaaaaaaccaggtacttaaactcctacaacctt 384

                                                                       
Query: 184 atggatatatttagaatagagtggaataaaaacttggtaatatatcaatatgcacagctg 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggatatatttagaatagagtagaataaaaacttggtaatatatcaatatgcacagctg 444

                                                                       
Query: 244 gaaagcagatgttcagttcaatgatctcagtacttgagaaaagtattaaacctgtaactc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaagcagatgttcagttcaatgatctcagtacttgagaaaagtattaaacctgtaactc 504

                                                                       
Query: 304 acttgaaaaaaatccccataatttattgtcctcatttttggctcttcttccaaattaact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttgaaaaaaatccccataatttattgtcctcatttttggctcttcttccaaattaact 564

                                                                       
Query: 364 ctagaaatatttctgttgctattgttgttgttgttgaaaccaattaaacaaccaggaaag 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 ctagaaatatttctgttgctattgttgttgttgttgaaaccaattaaacacccaggaaag 624

                   
Query: 424 tttgactg 431
           ||||||||
Sbjct: 625 tttgactg 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space:   347306
Effective search space used:   347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)