Query= MSMg01no096_f01.b1 MSMg01no096_f01.b1 CHROMAT_FILE:
MSMg01no096_f01.b1 PHD_FILE: MSMg01no096_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:37 2005
(585 letters)
>mm_chr4_30712571_30713554
Length = 984
Score = 971 bits (502), Expect = 0.0
Identities = 566/588 (96%), Gaps = 7/588 (1%)
Strand = Plus / Minus
Query: 1 aaaataaatagtaatatgtaaaat-tttgctattactaaattggtcaagatgagtttggc 59
||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||
Sbjct: 784 aaaataaatagtaatatgtaatatgtgtgttattactaaattggtcaagatgagtttggc 725
Query: 60 ttagttgtgacaattctacaaatttcaggggcataagaaataaagctgctgcgtttgatc 119
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 724 ttagttgtgacaattctacaaatttcaggggcataagaaatagagctgctacgtttgatc 665
Query: 120 attaaagccctctgtgca-tcctgggtagccacattcaactgttactggggaatccttta 178
|||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 664 attaaagccctctgtg-agtcctgggtaaccacattcaactgttactggggaatccttta 606
Query: 179 atcacgttctccctatatctcaacttagggctctttccatagtcaacaacgagactgaat 238
||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct: 605 atcacgttctccctatatctcaatttagggctctttccatagtccacaatgagactgaat 546
Query: 239 aaatagccaaagtttcaatacttacccctaaatactttagatccaagtgttatcatttgc 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 545 aaatagccaaagtttcaatacttactcctaaatactttagatccaagtgttatcatttgc 486
Query: 299 tgatacaataactaaagaccatcaacggctgagcttgagaggcacagagagagtgcaagc 358
|||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||
Sbjct: 485 tgatacaataactaaagatcatcaacggccgagcttgagatgcacagagag--tgcaagc 428
Query: 359 atgcacatgctcatgcaggtgacaagtggtgaagaactgaacacataaactgaagcacat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atgcacatgctcatgcaggtgacaagtggtgaagaactgaacacataaactgaagcacat 368
Query: 419 ctgacacattatgacaggaagaacttgctctgaagtgttagc-tttcaaaccgcttctgc 477
||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 367 ctgacacattaggacaggaagaacttgctctgaagtgttagccttt-aaaccgcttctgc 309
Query: 478 tttttcagctctgtactgtttccagggttgttctggagagcatttatttttcgtgaatca 537
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 308 tttttcagctctgtactgtttccagggttgttctggagagcatttattttttgtgaatca 249
Query: 538 tactgtttatcgctaaattatgacttttttgttatatattttattact 585
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tactgtttatcgctaaattatgacttttttgttatatattttattact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space: 560050
Effective search space used: 560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_f01.g1 MSMg01no096_f01.g1 CHROMAT_FILE:
MSMg01no096_f01.g1 PHD_FILE: MSMg01no096_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:37 2005
(431 letters)
>mm_chr4_30639372_30640203
Length = 832
Score = 804 bits (416), Expect = 0.0
Identities = 425/428 (99%), Gaps = 1/428 (0%)
Strand = Plus / Plus
Query: 5 atcccatctggaa-aaggtgtgagtggagagtggcttaattgtccagaggcaaattgctt 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atcccatctggaacaaggtgtgagtggagagtggcttaattgtccagaggcaaattgctt 264
Query: 64 cagagtcaaaggaaatataatattctgtgcataatttggcctacaaactttttgacattt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagagtcaaaggaaatataatattctgtgcataatttggcctacaaactttttgacattt 324
Query: 124 ttatatcattcacaatcaagtcattgtcaaaaaaccaggtacttaaactcctacaacctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatatcattcacaatcaagtcattgtcaaaaaaccaggtacttaaactcctacaacctt 384
Query: 184 atggatatatttagaatagagtggaataaaaacttggtaatatatcaatatgcacagctg 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggatatatttagaatagagtagaataaaaacttggtaatatatcaatatgcacagctg 444
Query: 244 gaaagcagatgttcagttcaatgatctcagtacttgagaaaagtattaaacctgtaactc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaagcagatgttcagttcaatgatctcagtacttgagaaaagtattaaacctgtaactc 504
Query: 304 acttgaaaaaaatccccataatttattgtcctcatttttggctcttcttccaaattaact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttgaaaaaaatccccataatttattgtcctcatttttggctcttcttccaaattaact 564
Query: 364 ctagaaatatttctgttgctattgttgttgttgttgaaaccaattaaacaaccaggaaag 423
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 ctagaaatatttctgttgctattgttgttgttgttgaaaccaattaaacacccaggaaag 624
Query: 424 tttgactg 431
||||||||
Sbjct: 625 tttgactg 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space: 347306
Effective search space used: 347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|