BAC Information

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BAC

Clone NameMSMg01-096I18
Chromosome4 (Build37)
Map Location 23,636,412 - 23,728,308
singlet/doubletdoublet
Overlap geneLOC623873
Upstream gene1700025O08Rik, LOC625462, LOC383998, LOC100040464
Downstream geneLOC664973, F730047E07Rik, Klhl32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I18.T7 (MSMg01no096_i18.b1)MSMg01-096I18.TJ (MSMg01no096_i18.g1)
ACCAG313198AG313199
length803720
length of high quality
(start - end)
215 (127 - 341)449 (56 - 504)
definitionCHROMAT_FILE: MSMg01no096_i18.b1 PHD_FILE: MSMg01no096_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:56 2005CHROMAT_FILE: MSMg01no096_i18.g1 PHD_FILE: MSMg01no096_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,728,094 - 23,728,308)(23,636,412 - 23,636,860)
sequence
TTTTGTTTTTTTGNGGGGGGGGGTNCTTTCCTTCTTTCTCNCTATATTCA
AATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGC
GGAATTCACTCAAGCACTTGCCTAAGTAGGTGAGAAGATGAGATTTAAAC
TCTAGAATGTTTGTTTTATATCTAGGTAGCAGAATCTAGGTAGATGAATA
ATAAAACAATTAAAGCAGAAAATTTTGGTCATGCAATAAAAATATTTAAG
TTAAACTAGCATATTTATATAATGGCATTTTCTGTGGACTTGATATGTAA
ATTAAAGGCTAAGCTAGGACTCATTTTCTGCCTTTCATACTAAGTAGTAT
CCATTAGAATACTATGATAAGAAGCCATAATTATTAACTTGATATAACCT
ATAATCGCTTTGGAATAGAATCTCAATGAGGTATTGTTTATATTGGATTG
TTCTGCGCTCATATCTGTATAGCACCGCCATAATTAATTTACACAGTATG
GCAATACTCAGTCTAATGTGGCAAGCATAATTTTCCATGCATAATTTGTA
TTTGCATCAATGCCGAATAATTTGACATTATCTTCTGCATTCACTATATC
TGATCATGTCTGTGCTTTATCTTTCTATGCCCCCTAATTTGTGCATTCTC
TCTACCCCTGTTTCTTTTTATTTCACACATTGCTCTTCCTCCCCTTGCAT
ATATTTCCACCTCGTTTTTGGTATCGTATTTTTATTCTAAACTTCCCTCA
ATTTTTGATTTTTATTTCATTTTATTTTTTATCCACTGATTTCTAATTTT
ATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTAACTACTGTTTCGTCATGTCTAAAATCTATAAATTGCATAT
TAAGAACTAATCTCATGTCAACATTACTTAATCCACTAGAGTTTCAATTC
AATAATAAAATGTGTGTTTATGAAGAACATCATTATTGAAGATAGTTAAA
TTGCTACAATATTTTGTCTGTACATATCTGATCTAAGCAGAAGTTTATAG
AAAAAGAAATATGATAATATCTATGTAAACTCTCAGTACAGGTGAGAAAA
CTCCCTTATTAATAATCAGTAAAATTTCAAAAGTTACATTTGGCTATGGA
AGTGCCTAGTGTTATGCCATCGACCTTCAGAGCCTACATATGAAGTACTT
TTAAAAAATGTTTTTCTAAGCCTGTCCACACTATGGTACATGTGAATTTA
AATTGTACCTTATTATCTCTATTTCTATCTCTCTCTCTCTCTCTCTGTGT
CTAAGCAAGAAGCATATTCTTGCTGGTACTCAGCACACTCTCAGAAAGTG
TCACTTTACCTACTGCATAGTTATCTCTGTATAAAGTTTCATGTAGAAAG
GAAGTATGTTAAAAATTGCATATGAATTGTTTGCTATACTGACATTCATA
TAATAAACTAACGTACAATTTCTTCTTTAAAACGTGACCAGAGCGATTTG
CTAACTCATTTTGCATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i18.b1 MSMg01no096_i18.b1 CHROMAT_FILE:
MSMg01no096_i18.b1 PHD_FILE: MSMg01no096_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:56 2005
         (215 letters)



>mm_chr4_23727894_23728508
          Length = 615

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggtgagaagatgagatttaaactctagaatgtttgttttatatctaggtagcagaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 415 taggtgagaagatgagatttaaactctagaatgtttgttttatatctaggtaggagaatc 356

                                                                       
Query: 61  taggtagatgaataataaaacaattaaagcagaaaattttggtcatgcaataaaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taggtagatgaataataaaacaattaaagcagaaaattttggtcatgcaataaaaatatt 296

                                                                       
Query: 121 taagttaaactagcatatttatataatggcattttctgtggacttgatatgtaaattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 taagttaaactagcatatttatataatggcattttctgtggacttgatatgtaaattaaa 236

                                              
Query: 181 ggctaagctaggactcattttctgcctttcatact 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ggctaagctaggactcattttctgcctttcatact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no096_i18.g1 MSMg01no096_i18.g1 CHROMAT_FILE:
MSMg01no096_i18.g1 PHD_FILE: MSMg01no096_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:56 2005
         (449 letters)



>mm_chr4_23636212_23637060
          Length = 849

 Score =  837 bits (433), Expect = 0.0
 Identities = 445/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaactactgtttcgtcatgtctaaaatctataaattgcatattaagaactaatctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaactactgtttcgtcatgtctaaaatctataaattgcatattaagaactaatctca 260

                                                                       
Query: 61  tgtcaacattacttaatccactagagtttcaattcaataataaaatgtgtgtttatgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaacattacttaatccactagagtttcaattcaataataaaatgtgtgtttatgaag 320

                                                                       
Query: 121 aacatcattattgaagatagttaaattgctacaatattttgtctgtacatatctgatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatcattattgaagatagttaaattgctacaatattttgtctgtacatatctgatcta 380

                                                                       
Query: 181 agcagaagtttatagaaaaagaaatatgataatatctatgtaaactctcagtacaggtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagaagtttatagaaaaagaaatatgataatatctatgtaaactctcagtacaggtga 440

                                                                       
Query: 241 gaaaactcccttattaataatcagtaaaatttcaaaagttacatttggctatggaagtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaactcccttattaataatcagtaaaatttcaaaagttacatttggctatggaagtgc 500

                                                                       
Query: 301 ctagtgttatgccatcgaccttcagagcctacatatgaagtacttttaaaaaatgttttt 360
           || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ctggtgttatgccatcgaccttcagagcctacatatgaagtactttttaaaaatgttttt 560

                                                                       
Query: 361 ctaagcctgtccacactatggtacatgtgaatttaaattgtaccttattatctctatttc 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaagcctgtccacgctatggtacatgtgaatttaaattgtaccttattatctctatttc 620

                                        
Query: 421 tatctctctctctctctctctgtgtctaa 449
           ||||||||||||||||||| |||||||||
Sbjct: 621 tatctctctctctctctctgtgtgtctaa 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)