BAC Information

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BAC

Clone NameMSMg01-097A06
Chromosome4 (Build37)
Map Location 110,933,746 - 110,934,043
singlet/doubletsinglet
Overlap genenone
Upstream geneElavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097A06.T7 (MSMg01no097_a06.b1)MSMg01-097A06.TJ (MSMg01no097_a06.g1)
ACCAG313554AG313555
length760807
length of high quality
(start - end)
292 (119 - 410)---
definitionCHROMAT_FILE: MSMg01no097_a06.b1 PHD_FILE: MSMg01no097_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:36 2005CHROMAT_FILE: MSMg01no097_a06.g1 PHD_FILE: MSMg01no097_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGAAAAAAATAAAAACACTGATCTTTAGAGCACACGCCAAAATGTGTA
ATGGTCTAAATTGCGGCGCTATACGACTCCTATTCGAGAGGACCGCGGAT
TCTCGCCTTTCCTGGTGGACACGCCTTTAATCCCAGCACTTGGGAGGCAG
AGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT
CCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAGAAAAAAAAAAA
AAAAGAATTCTCAGAGTCATTATTTCATGAACTTGTGTGCAGACGGAAAG
GCCTATGGTAACATAGTGTGCCTAGGGAAATCAAAGGAGAACACTGGATT
TTGGTCCTCACTTTCCATATTTTTTTGACATATGGCTTAAAGTTATGTAC
CCCAGACTAGTCAGCACATAAACTTGTAGGGATTGTCCTGTCTCCACCTC
CCATTTTACCATAGGAGCACTGAGATTACTGATATATATTATCATCCCCA
GTTTTACATGGGTTCAGGGAAATCAAATCCAGATCCTTATGCTGAGTGGC
CAACAAGTTACCCATTAAGCCTTCTCCCTAACCCCACATGCGGACATCTT
GCTGACCCACAACTACCCATATATCTATGTACGGGCATTACCATCAGGAC
CAACGCACGGGGAACAACCCGAAATCTCGAACAGAATTTCTGAAGTGTCC
TAAAAGAGAGCGTGCACCACCGCGGAAAAAAAGAAACTGGGTAACAACAT
CAGGACCCCG
CAATAATGAGAGAGGGCAGAAGAGACGCATGGTTTCCACATTTGAGGTGA
CCTATAGAAGGATTCCCAAAATTCAGATTGGGGCCTTAGGCATAATGATA
GTGCTAGGCCTACAGAGCCGTTGGGTCAGTATTAGAGGACGGGCTTTCTA
GACAGNATGGATAAGGGTGGAAAAAACTTGATTTCTAGAGGGCTTAGCTT
GTAGGTGCAAATACAAGAGTTATGTGGGTGAAATGTATGAAAAGGGGAAA
GGTGCGGGGGGGGCGAGGTTTCCGGTCCCCACTGTGATTGTTCTTTCCCG
ACTTTGTGTTCGTACTCTTACTGCACCTAGTCGGTGCCTGTATATTTTGT
GCCACTTGGACCCCCTCTGGACCAGCACCTTCTCGTGATATGCGCTAGAC
TGGACTCGACATAAATAAAAACCAATAAGGGGGAATATATAAAACACTGG
TGATTGGTACCACTTGGCGGTGGCAAAACTATGCGTGTGTGAGGGGGAAA
TAGTGGGTTTTAAATATGGGCCTCCCACAAAAACACAATAAAAAAAAAAT
GACGGGGAGTGATGGGAATTAAAAGACGGGTGGTGCAAAACAATAATAAA
GAAAAGTGTGGAAACAACAATGTGGGGGGTGTGTTTTGCTTCCTTTCTTT
CCCACCCCCCCCCACGGGATCTTTTGGTTTTTTCATATCTATTACCCTCG
TAAAAAAAGTGGGTGGGGAACAAACAAAACAAATGGGGGTGGGTGTGTGT
TAAACTGGGCGCCCTCTTTCTTTTGTACATTTTCTCCTTCTAAAGGTTGG
CCCACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_a06.b1 MSMg01no097_a06.b1 CHROMAT_FILE:
MSMg01no097_a06.b1 PHD_FILE: MSMg01no097_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:36 2005
         (292 letters)



>mm_chr4_110933553_110934243
          Length = 691

 Score =  485 bits (251), Expect = e-141
 Identities = 284/299 (94%), Gaps = 8/299 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcgaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 194 acacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagtttgaggcc 253

                                                                       
Query: 61  agcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctca 313

                                                                       
Query: 121 gaaaaaaaaaaaaaaa-------gaattctcagagtcattatttcatgaacttgtgtgca 173
           ||||||||||||||||       |||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaaaaaaaaaaaaaaaaaaaaaagaattctcagagtcattatttcatgaacttgtgtgca 373

                                                                       
Query: 174 gacggaaaggcctatggtaacatagtgtgcctagggaaatcaaaggagaacactggattt 233
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gatggaaaggcctatggtaacatagtgtgcctagggaaatcaaaggagaacactggattt 433

                                                                      
Query: 234 tggtcctcactttccatatttttttgacatatggcttaaagttatgtaccccagactag 292
           ||| |||||||||||| | ||||| ||||||||| ||||||||||||| ||||||||||
Sbjct: 434 tggccctcactttccacaattttt-gacatatggtttaaagttatgtatcccagactag 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)