BAC Information

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BAC

Clone NameMSMg01-097A07
Chromosome4 (Build37)
Map Location 30,396,906 - 30,397,075
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665185
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097A07.T7 (MSMg01no097_a07.b1)MSMg01-097A07.TJ (MSMg01no097_a07.g1)
ACCAG313556AG313557
length1,157809
length of high quality
(start - end)
---169 (128 - 296)
definitionCHROMAT_FILE: MSMg01no097_a07.b1 PHD_FILE: MSMg01no097_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:36 2005CHROMAT_FILE: MSMg01no097_a07.g1 PHD_FILE: MSMg01no097_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCAACCCCCAAACCCAAACCCACCCAACCCACCACCCCAAAGACA
ACACCCCGCCACAACACTCTCCGCCCAGACACTCCAATTTTTTCCACCTT
GACTCTTTTTTTCTAAAACACAACCTGTGACCGGTGAATTTTTTCTACTT
ATAGATGCGAGGGTATGACAAATATAAAGGGTAAATTGGGGCCTATATTA
CTAAATTAAATTAAACTAACACCACCCAAACATGCTGTTTAAAGCTATCA
AGTAGAAATAAACATAGGCAACACCTTATTGTCTTAGATAAATAAATAAA
AAGAACAGACCTGTTACCATAACCTCACAGGATTTACTTAATAAAACAAC
CATAAATAGCAAAAAACAAAAAGGGTGGGGGGCATATGTGCGACAATCGC
TATAGGATATTTTTATTATGACACACACCAACGACATCGGGGCGAAACTA
ATCACCTCGAGGAACAAATCAAATTAAAACACAATTGGAGATAGTAAGAA
ATGACTANAAACAGAACTATAGTCCCATAATAGAAACGCAAAAATAAAAA
CAAGTATTCTTTCTAAAACAAACAAAACACAAATATTCGAATATAATATA
ATTAACATAAAAAGCAGAAGAGATAAAATACGGACAAAGTGGAAAAAAAT
CAAAACATTCAAATATATTACAACTTATATACCACATAGATAAATACAAA
AATAAAGAGGTGTAAGAAACAAATAAAAAATAAAGAGAACAAATAGGAAA
AAAAATAAAGGTAGAAAAACAAAAACAAAAAATAGCTTAATAAAAATGTA
GATACAAAACAAATAAAATCAAACGAATAACACTAGAAAAATAGATAATA
GAGGAAAAAGAGAAGACGGGGTAATAATATATAAAAAAAAAATAAAGAAA
ATAAAAGGAATTACAATAAATCAAAACATTAATAACTTTAATACAATTAT
TAAACAGCGCAAAGATAATAACACAACTATGAGATACAAGTAACTAATAA
GAACAAAACAAAGACAGATTTACAACATCGACATCTACCATAATCATAAA
TGCGCGACAAAACATATTGGATAATCATCGAACAGAACAAATACAAGATA
AATAGTAAAATAGGCAAATAGAGAATAACATACACGATAGAATTCGGTGG
GTCAGGG
AAAAAAAAAATTAAATAAAAAAAACAAAAAACACACACCCCACCTCCCAN
NCCCCCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCCAAATTCTGTGCTTATCCCTGTACTCTTCT
ACTTTGAGAGCACACAAATGATAATGTTATTCACTCAGAGAGGAACATAT
ATTGAGAAAGAAAAGTTACACAAGAGGAAGCATTTCAAAAGATTTGAAGC
ATTTCACTTTAGAGGGAAACTTAAAAGTCTATGAAAACAAACAAACAAAC
TAACAAACAAACAAACTAAAAGTGTGACGGACAGTTCCCGGCATCTTCCT
TAAGCTATATCATCTTACTATCAAGTATGTATTTCTTTGAAATTCAACCG
GAATTTCCAACTTTGCTTATTAAAGAAAAGGTGACTACCAAAAGATTAAT
TCCAGGGCTTACGCACTTTGCAAGAAATTCCTTAATTCCTCTGACGACCT
GCGGTTTGTAACATTTCCTTCACTACGGCACCCCTTCAAAATGCCACCCT
ATGTGTACCCTTGCACTCATGATTGTCCGGCCAGAATAATACCCACCCCA
ATTGCTTCACGGTGCATCCCTCACTTCGGCCCCCCCCCAAAAATTTCACT
CTCCTTTACGGCCCTGCTTTCCCCCCAGCTAGGTCTGACCGCCCCCAAAT
GTACAATATCTTTTGGGTAACCTAACCCCCGCCTCTGCCCTCCCTTTCAA
TCTCTGTTTCCCCCCACTTTTTTCTGTCCGTTTTCGAATTTAAACGGCCT
GAAAACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_a07.g1 MSMg01no097_a07.g1 CHROMAT_FILE:
MSMg01no097_a07.g1 PHD_FILE: MSMg01no097_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:36 2005
         (169 letters)



>mm_chr4_30396706_30397275
          Length = 570

 Score =  313 bits (162), Expect = 3e-90
 Identities = 168/170 (98%), Gaps = 1/170 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcttatccctgtactc-ttctactttgagagcacacaaatgataatgttattcactc 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgtgcttatccctgtactctttctactttgagagcacacaaatgataatgttattcactc 311

                                                                       
Query: 60  agagaggaacatatattgagaaagaaaagttacacaagaggaagcatttcaaaagatttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agagaggaacatatattgagaaagaaaagttacacaagaggaagcatttcaaaagatttg 251

                                                             
Query: 120 aagcatttcactttagagggaaacttaaaagtctatgaaaacaaacaaac 169
           |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 250 aagcatttcactttagagggaaacttaaaagtctataaaaacaaacaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 570
Length adjustment: 8
Effective length of query: 161
Effective length of database: 562
Effective search space:    90482
Effective search space used:    90482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)