BAC Information

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BAC

Clone NameMSMg01-097D13
Chromosome4 (Build37)
Map Location 15,581,304 - 15,581,525
singlet/doubletsinglet
Overlap genenone
Upstream gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097D13.T7 (MSMg01no097_d13.b1)MSMg01-097D13.TJ (MSMg01no097_d13.g1)
ACCAG313710AG313711
length791683
length of high quality
(start - end)
223 (135 - 357)249 (49 - 297)
definitionCHROMAT_FILE: MSMg01no097_d13.b1 PHD_FILE: MSMg01no097_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:53 2005CHROMAT_FILE: MSMg01no097_d13.g1 PHD_FILE: MSMg01no097_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGGGGGNGGGNGNNNNNNNNNNNGGGGGCCTGTCCCCNCNNNTCAT
CCTAACGGNCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCAGAAGATTTTACTTGTTGTAACATTATTGAA
GCCAAAGCTGACATCTCATAAAGACTGTAGTCCAATTGCCATTTCCAAAT
GGCTTTACAGCAATGAGTTTTGTAGCTACTTGAGATTTTGGTCCGTGTTA
AGAAAAAATGTGTGTTTCAAAAGAGGAAAAGGATGAATGGTTTCTACTAT
GAGACTGCCAGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGT
GTGCCTGTGTGAGTGTGTGCCTGCGCGACTGTGTGTTTTTGTGCGACTGT
GCGCGCGCGTGTGCCCGTGTGAGCGTGTGCGTCTGCGTGCCCCTCCCACG
ATCTAACTCTTTTCTCACGCCGACGTATTCTTCATCGTATTATTACCACA
TCAAACGTTCCAGAGTTTTTCCTGAAAATTGTGACCTGAATATTCCCCAT
TTTGTCTCCCTGATCTCCCCTCTCCCCCTTGTCTACTCCTCCCTTTCTAC
CTCTGCCTTCCCCCCCCCCCCCACATTGTCACTTGTTACCCTACACCAAC
ATTATCCTTCCCATAATTTATCTTCCCTCCCCCCCCTTTTTTTACAAAAT
TCCACTAGACACACTACCCCCTCTATTACCCTTCGCATTTATTATATTCT
CCTCCCCCCGCCTTTCTCTTTACCCAACCTCTCTATCCCCG
GGCGGCCGCCTGTCTCCCAAATTGAGGTGAACTATAGAAGTACCCCCGGA
ATTCCTTAAAGAAAAACTGGAAAACACAAACAAACAGAATTCCTAAAAGA
AAAACAGGAAAGCACAAACATGTGATGGAAATGAACAAAACCATATAAGA
CATAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGTAACGC
TGGAGATAGAAATCCTAGGAAAGAAATCTGTAACCATAGATGCGAGAATC
AGCAACGGAATACATGAGATGGAAGAGAGAATCTCAGGTGTAGAACATTC
CATAGAGAACATCAGCAGAACAATCAAAGAAAATACAAAATGCAAAAAGA
TCCTAAGTCAAAGCATCCAGGAAATCCAGGACACAATGAGAAGACCAAAC
CTATGGATAATAGGAGTAGATAAAAATGAAGATTTTTGGGGCTGGAGAGA
TGGCCCAGCCGTTAAAGGCTAGGCTCACAACCCAAAATATAAGAGAATGA
AGATTTTCAACTTAAAGGGCCATCAAATATCTTCAACAAAATTATATAAC
AAAACTTCCCAAACCTAAAGAAAGACATGCCCATGAACATACCACAAGCC
TACAGAACTCCAAATAGACTGCACCATAACAGAAACTCTTCCCGATACAT
ATTATTCCTAAACACAAATTCCCTATATTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_d13.b1 MSMg01no097_d13.b1 CHROMAT_FILE:
MSMg01no097_d13.b1 PHD_FILE: MSMg01no097_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:53 2005
         (223 letters)



>mm_chr4_15581149_15581772
          Length = 624

 Score =  360 bits (186), Expect = e-104
 Identities = 214/224 (95%), Gaps = 3/224 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtaacattattgaagccaaagctgacatctcataaagactgtagtccaattgccattt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 377 ttgtaacattattgaagccaaagctgacatctcataaagactgtagtccaattggcatat 318

                                                                       
Query: 61  ccaaatggctttacagcaatgagttttgtagctacttgagattttggtccgtgttaagaa 120
           ||||||| |||||||||||  |||||||||||||||||||||||||||| ||||||||||
Sbjct: 317 ccaaatgactttacagcaacaagttttgtagctacttgagattttggtctgtgttaagaa 258

                                                                       
Query: 121 aaaa-tgtgtgtttcaaaagaggaaaaggatgaatggtttctactatgagactgccagtg 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaaaatgtgtgtttcaaaagaggaaaaggatgaatggtttctactatgagactgccagtg 198

                                                       
Query: 180 tgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgcctg 223
           ||||||||||||||||||||||  |||||||||| |||||||||
Sbjct: 197 tgtgtgtgtgtgtgtgtgtgtg--tgtgtgtgtgcgtgtgcctg 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 624
Length adjustment: 9
Effective length of query: 214
Effective length of database: 615
Effective search space:   131610
Effective search space used:   131610
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)