BAC Information

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BAC

Clone NameMSMg01-097E06
Chromosome4 (Build37)
Map Location 49,055,159 - 49,055,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040788, Nr4a3, Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097E06.T7 (MSMg01no097_e06.b1)MSMg01-097E06.TJ (MSMg01no097_e06.g1)
ACCAG313740AG313741
length678770
length of high quality
(start - end)
234 (61 - 294)123 (141 - 263)
definitionCHROMAT_FILE: MSMg01no097_e06.b1 PHD_FILE: MSMg01no097_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:56 2005CHROMAT_FILE: MSMg01no097_e06.g1 PHD_FILE: MSMg01no097_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTATTCCAGAAGACCGCGGAATTCCATTCTCTGCCCACCTTTAGACT
TAGGATATTACAACCAGGGTGGTAGCACTATCTCCATGCTAAACATGACA
AAACATTCACAAAAGAACTGAAGAAGACACCCACAAAGGAGAAGACATCC
CATGTTAACAGATTCAAAGAACTAACATAGTTAAAAGGACCAGACGAGGT
GGGGCATGGTGGTACGTGATTTTAATCCCAGCACTTGGAAGGCAGAAGCT
GGTGGATCTCTTTGAGGTTGAGGCCAGCCTGATCTACAAAGCAATTTCTT
AGATAGTGTCTCAAAAATAAAAATCAAAACAAGGAATCAAACAACAAAAC
CCACCAAATTTTCTAGACTATGAAAAATAATCCAGAGTTAATCCAATTGC
TAACAAAATTTCAAAGGTATTTTCCATTTTCTTTTTAAAAAGGCAATCTT
AAATAATACTTCATGATGGCATTCTTATCTGTTGATTATGGTTTTTTACT
GAAGCCTGGGATGCTATAAGGTTCAGAGTTGTATTAAGTCCCGTGCCTTA
TCATATCTCTTCTGATCCTGCTTCAGTGAATGGAGGAAGGACAGTCATAC
TGTCTTATGAAAGGCATATGCCGTTTCTCTGGGGGACGAACAAAGTATAG
ACTTTCCATTAGAACTCCATAACACCCG
AAAAACGGGAAACACGGGACCCGGCGGAAATGAACAAAAAGGGGTGTAAA
CNNNAATCGATGATATGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCGCAAATTCCACAGGGAATGGGAAAGAA
AACCAAATCAAAATGCCTTAAGCCAGTCCAAGTGAACTTCTCAAGTAACT
GAAACATCTAGTGGTATCCTAAAGCACAGGAAATTCAACATCATCTTACA
GATATAATCCTTATGGGATTCGCAGTCTTACAGAGCCTCAACTGCTTAGT
GTCCTAGTAAGGAAAAACATGACAGTTTTCCTTTTGTGAATTTTGACCTA
ATTCTCTAGGGCTCTATCATTTACCATCTGCTGTAAACCAGGGCAGGCTA
GGACAGTGGAAAGCCTGATCCACTGTATTGGGATTCTAGACTCATACTTA
TATATGGGAAAACAAAAAAAGTTTGATCGCCCGCTTGGAGGACACCAAGT
GCTTAGCAGGATGCATTCTTGGTTGTAGGGTGNNCAAACCAACCCACAAC
ACCACATGTCCTCAAACTTAAAACACGGGGTGGTGAAACAAAAACCTAAG
TTGACCAACACCGGGGGGCTTACATGCAAATTTTCTACAAATCACACAAG
GAATGTATGTATTCAATCATTAGCTCGGCATATTGGGGGGGAAAAATGCA
ACAAAGGGGGGGGGTGATCTTCCCTGGGGCTTTACATTATATCACCAGAA
TTCTTTAGCGTCGACAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_e06.g1 MSMg01no097_e06.g1 CHROMAT_FILE:
MSMg01no097_e06.g1 PHD_FILE: MSMg01no097_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:57 2005
         (123 letters)



>mm_chr4_49054959_49055481
          Length = 523

 Score =  223 bits (115), Expect = 4e-63
 Identities = 121/123 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaaagaaaaccaaatcaaaatgccttaagccagtccaagtgaacttctcaagtaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaaagaaaaccaaatcaaaatgccttaagccagtccaagtgaacttctcaagtaact 260

                                                                       
Query: 61  gaaacatctagtggtatcctaaagcacaggaaattcaacatcatcttacagatataatcc 120
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gaaacatctagtggtatcctaaggcacagtaaattcaacatcatcttacagatataatcc 320

              
Query: 121 tta 123
           |||
Sbjct: 321 tta 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)