Query= MSMg01no097_f04.b1 MSMg01no097_f04.b1 CHROMAT_FILE:
MSMg01no097_f04.b1 PHD_FILE: MSMg01no097_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:01 2005
(168 letters)
>mm_chr4_76718089_76718657
Length = 569
Score = 296 bits (153), Expect = 5e-85
Identities = 162/165 (98%), Gaps = 1/165 (0%)
Strand = Plus / Minus
Query: 1 cagtccttctc-ctacaattttttgaaggtttgttattatttcatctcagcatcacccat 59
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cagtccttctcaatacaattttttgaaggtttgttattatttcatctcagcatcacccat 306
Query: 60 tacattatagccaacaatgctgtcattaacatttagaaattcttagttatttgagagaaa 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 305 tacattatagccaacaatgctgtcattaacatttaaaaattcttagttatttgagagaaa 246
Query: 120 atgtgtcaatgcagggtcagaattagctgtcaaacttggcattaa 164
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgtgtcaatgcagggtcagaattagctgtcaaacttggcattaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 569
Length adjustment: 8
Effective length of query: 160
Effective length of database: 561
Effective search space: 89760
Effective search space used: 89760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no097_f04.g1 MSMg01no097_f04.g1 CHROMAT_FILE:
MSMg01no097_f04.g1 PHD_FILE: MSMg01no097_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:01 2005
(454 letters)
>mm_chr4_76551977_76552826
Length = 850
Score = 847 bits (438), Expect = 0.0
Identities = 447/452 (98%), Gaps = 4/452 (0%)
Strand = Plus / Plus
Query: 3 acacatctttctactggagccctagggaccaagactcaatctagaaatggactgttttgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 acacatctttctactggagccctagggaccaagactcaatctagaaatggactgttttgg 262
Query: 63 tagatagtacatttgccctgtacaataactagttctgtattattttgacttcacctggat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagatagtacatttgccctgtacaataactagttctgtattattttgacttcacctggat 322
Query: 123 atactacagaatgtaattaatgtacaaacacagaaaaggaaacctgaccttggatacatc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atactacagaatgtaattaatgtacaaacacagaaaaggaaacctgaccttggatacatc 382
Query: 183 cagcaaaggctaaagtagtaccttgagaactgtctggtgatataatctatactctacctg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagcaaaggctaaagtagtaccttgagaactgtctggtgatataatctatactctacctg 442
Query: 243 catctgcctcttgctgttttagacaagagttgaatatatctgcctggtgtgtgatgcctt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catctgcctcttgctgttttagacaagagttgaatatatctgcctggtgtgtgatgcctt 502
Query: 303 ctgcatctctcagtgagaagaggtggataccaaactcttctcagtagaaatgatttgctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgcatctctcagtgagaagaggtggataccaaactcttctcagtagaaatgatttgctg 562
Query: 363 agagaggtaggccaacaatttaggtaatctcttaaagggcttctactcagactatcatct 422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agagaggtaggccatcaatttaggtaatctcttaaagggcttctactcagactatcatct 622
Query: 423 ctatgcacagactaacaatgacaacataataa 454
|||||||||||| ||||||||||||||||
Sbjct: 623 ctatgcacagac----aatgacaacataataa 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 850
Length adjustment: 10
Effective length of query: 444
Effective length of database: 840
Effective search space: 372960
Effective search space used: 372960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
