BAC Information

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BAC

Clone NameMSMg01-097G07
Chromosome4 (Build37)
Map Location 75,936,054 - 75,936,345
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097G07.T7 (MSMg01no097_g07.b1)MSMg01-097G07.TJ (MSMg01no097_g07.g1)
ACCAG313834AG313835
length961692
length of high quality
(start - end)
---292 (57 - 348)
definitionCHROMAT_FILE: MSMg01no097_g07.b1 PHD_FILE: MSMg01no097_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:07 2005CHROMAT_FILE: MSMg01no097_g07.g1 PHD_FILE: MSMg01no097_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACACCNNNNCCAANCNNAACCAACCCANCNNNCCCCACGNNCNNNNNGG
GGGGAGGANCGTAACGATAAACTGCGGGCGCTAAGAAGAGGAACCACACT
CAACCACCAGCCGCGGAANNCNGNNNGGTTTCCCCAAAACACCGCCGGAG
AAGCAGAAAAAAGCGTGAATGGGAGCGGGCCCCGGTGGTTTGTTAGTCAC
GAGGCGCGGTGTACAGTGAAGCGAACAAAAACGAGAACGACCCAGGCCGT
GGGGTGTGTGGAGGGTAGACCTACACCAGCGTTTTCCGTCGCCTACCCGC
GCCGTTAAGGTCCCCCGCGACCATTATACATGTGTGGGGACACTAAGCGC
CCCCTCCCGCCCTTGATCGTTCTGCGAGCCCAACTATGTAACGACCGTCC
CTACCGCTCCCGTGCATATCCAGACCGACGCGACGCGTCTTGATATATAC
GCAAGCAGACGGGGCGCAGAGGGTGCCGGGATCCGGGGGTAGCTTCAGAG
CGCCCCGCCCAAGTGCGCACATCTCATTCACCGCCCACCAGCGGCTACCT
CAAGAAGGTGGACAACATCTCGCGAGTAATGGATAAACTTATAGCCGCCA
CGGTCGCGTGAGCCGTGGGCGTCGCCATATTACGCATGGGCGGAAGAAAC
AACGTATCGATAAATAACCACAGGTCGGACGATACCCCTACAGAGAACAT
TCAACAGGCGGGTGCCAATAAAAGATAGTACGTCAGCGCGCCGGGGCGTT
ATTAATGCCCACCATGGAGATGAGGGATGAGACGCACCCCCTTGCGTGTG
ATCTTTGGCGACCCCCAGAAATACCACCATGAGCGCGATCGTTTGTGAGA
ACTTCTATTTATACCAACACTCCCATACATAATGGGGAAATAGTGCGGGC
GGCATGATCGGACGACCCGGATATATAGCGTGGGCGAAAAACACACGGGG
AAACGGCCGCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAA
ATACTGTGCCTATCAATAGGGCAGGTGATGAGTTTGCCTAAAAGAGAACA
ATGAAATGATCTTGAAGTGTACATAGTTAGGTCTGACTCCAGGGACATGC
AGTAAATGAAAGAAATAGGATACATTCAAGAAAACCCATGTGGTTAGGGG
TGGGATGGGACTGAAGACTTTTGTAATTGAAATACAATCTGCTAAATTCT
TGGCATGAAATCACCCTAGCAGGACTGAATGAACGGGTGAAAAGTTGTTT
GCTATTTTTTTAATATTGGACTTTGTAGCAATATGAAAATCTGAAGGGAG
GTCAGGAACACTTTGTTCGTGTAAACTGGAGAATAAGGAATAAAAATTAT
TTTGGCTTCTTGGGTTCTGCACATTAGGCACCACCTCAAAAGGGATTTTA
CAACAGTGTCTCGAAAGGATATCCCAGCAAAGCAACTTCAAACTGTTAGG
ACTTCTAGGTAAACACGCCTAAGACTGGCAGATGTCTAAACTGGGCAGGT
GTTTGTTCACTTCCTTAAACTTTACATGTTGCTTTGCCCTGTCCGTTCTC
CATGCCTTGTTCAAGACGAGCACACACCCCGTGTTTCCGAACACGTGCTC
TTCCCTTTTCTTCTAACAAAAGCGGCTTTAGGGTTCTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_g07.g1 MSMg01no097_g07.g1 CHROMAT_FILE:
MSMg01no097_g07.g1 PHD_FILE: MSMg01no097_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:07 2005
         (292 letters)



>mm_chr4_75935854_75936545
          Length = 692

 Score =  518 bits (268), Expect = e-151
 Identities = 286/296 (96%), Gaps = 8/296 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctatcaatagggcaggtgatgagtttgcctaaaagagaacaatgaaatgatcttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgcctatcaatagggcaggtgatgagtttgcctaaaagagaacaatgaaatgatcttgaa 433

                                                                       
Query: 61  gtgtacatagttaggtctgactccagggacatgcagtaaatgaaagaaataggatacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtgtacatagttaggtctgactccagggacatgcagtaaatgaaagaaataggatacatt 373

                                                                       
Query: 121 caagaaaacccatgtggttaggggtgggatgggactgaagacttttgtaattgaaataca 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 caagaaaacccctgtggttaggggtgggatgggactgaagacttttgtaattgaaataca 313

                                                                       
Query: 181 atctgctaaattcttggcatgaaatcaccctagcaggactgaatgaacgggtgaaaagtt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 312 atctgctaaattcttggcatgaaatcaccctagcaggactggatgaacgggtgaaaagtt 253

                                                                   
Query: 241 gtttgctat----ttttttaatattggactttgtagcaatatgaaaatctgaaggg 292
           |||||||||    ||    |||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtttgctatgagctt----aatattggactttgtagcaatatgaaaatctgaaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)