BAC Information

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BAC

Clone NameMSMg01-097H21
Chromosome4 (Build37)
Map Location 85,073,396 - 85,073,629
singlet/doubletsinglet
Overlap genenone
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneA930009N24, LOC668052, Adamtsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097H21.T7 (MSMg01no097_h21.b1)MSMg01-097H21.TJ (MSMg01no097_h21.g1)
ACCAG313908AG313909
length698689
length of high quality
(start - end)
235 (119 - 353)245 (56 - 300)
definitionCHROMAT_FILE: MSMg01no097_h21.b1 PHD_FILE: MSMg01no097_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:15 2005CHROMAT_FILE: MSMg01no097_h21.g1 PHD_FILE: MSMg01no097_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCCGCTAAACGACTCCTATATCCAGAGAATCCGCGGAATTCACCATT
GTTTCTTCTGCCTCCAGACTTCCTCCTTATACAGCCACAGATCCAGAGGC
CTGAGCATAACCCTGGGGTCATTACAATACCTCTACATCCCTTCCCATAT
CACATCCACCACCAAGACTCACTGAGTCTTTTGCCTGAGCATATTTGGAT
TCTGCTGCTTGCATGCCTCTGAAACGAAATACATTTCTCTCCATTGTAGT
ACCCCCATCTGAATTCAGGCCATCTCTTCTCCTAGGCTGCACACTGGCTG
TATGCCCCTAGTCTCCACACAAAGAAGTTTAAAATTTTTCTTACTTGCCT
GATGTATGTCACACCCTTCTCAGTTTAGATGGTATAAAAATCTTATTGTC
TTCAAGCAATTTAGAATTATCTTCATGATCTGGCCCCTTCCTCCACTCCA
GGCTTTATCCATGAAGATATTTTATACCGTAGGTGGTCTGAAACCAGCAA
CCTCCAAACTGGAAGACTCACAGCTAGAGCATGCACAAGAGGAAAAGATG
AGAACTTATTATGTGAAGAAAGGAACTTTTACTAACATTTAACTAATCTC
ATGAAATGCACTGCAATTACATTTAATACAGTTATCTCCTCATGGCTCAC
TCAGCCCTCACACTTCAGGAAGTTAATTCCCCTCCCTGCAAGAGGGAC
GGCGGACGCCTGGTTTCATACCTGGGGTGAACTATAGAAGGTTTCGAAAA
ACTCTCACCTGAGGAATACTAAATGGCAGAGAAGCACCTGAAAAAATGTT
CCACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTC
CACTTCACTCCAGTCAGAATGGGTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTATA
TTATCGTACATAGTACTATCGGAGGATCCAGCAATACCTCTTTTGTGCAC
ATATTCAGAAGAGGTCCCAACTGGTAAGAAGAACACATGCTCTACTATGT
TCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGATAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACCGAAAATGTGGTACATTTACACATTGGA
ATACTACTCAGCTATTTAAAAAAATGAATTTATGAAATTCCTAGGCAAAT
GGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGG
ACCTCGCACAGCATGCACTCCTTGATAAATGGATATTATCCCTGAAACTT
AGGATACCCCAGATTTTAGATACAGCTTGCCAAATGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_h21.b1 MSMg01no097_h21.b1 CHROMAT_FILE:
MSMg01no097_h21.b1 PHD_FILE: MSMg01no097_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:15 2005
         (235 letters)



>mm_chr4_85073196_85073830
          Length = 635

 Score =  383 bits (198), Expect = e-111
 Identities = 225/234 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattacaatacctctacatcccttcccatatcacatccaccaccaagactcactgagtc 60
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattacaatacctctacatcatttcccatatcacatccaccaccaagactcactgagtc 260

                                                                       
Query: 61  ttttgcctgagcatatttggattctgctgcttgcatgcctctgaaacgaaatacatttct 120
           |||||||||||||||||||||||||||||||||||||| |||||||  |||||||||| |
Sbjct: 261 ttttgcctgagcatatttggattctgctgcttgcatgcttctgaaattaaatacattttt 320

                                                                       
Query: 121 ctccattgtagtacccccatctgaattcaggccatctcttctcctaggctgcacactggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccattgtagtacccccatctgaattcaggccatctcttctcctaggctgcacactggc 380

                                                                 
Query: 181 tgtatgcccctagtctccacacaaagaagtttaaaatttttcttacttgcctga 234
           ||||| |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 381 tgtatacccctagtctccacacaaagaagtttgacatttttcttacttgcctga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)