BAC Information

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BAC

Clone NameMSMg01-097M10
Chromosome4 (Build37)
Map Location 49,889,829 - 49,890,072
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097M10.T7 (MSMg01no097_m10.b1)MSMg01-097M10.TJ (MSMg01no097_m10.g1)
ACCAG314123AG314124
length976704
length of high quality
(start - end)
---244 (54 - 297)
definitionCHROMAT_FILE: MSMg01no097_m10.b1 PHD_FILE: MSMg01no097_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:38 2005CHROMAT_FILE: MSMg01no097_m10.g1 PHD_FILE: MSMg01no097_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCACACCCCCACAACANNACACCCCACAACCAACCACCACCCCANCA
CCCCCCACCACCTTACCCCCACACCTATTTTTTACTCCAATACGTTCGTT
TATATTATTACTCCATGTTACCGTAATTAGCACGTTCTAGTCGGACGGAC
TCTATGCAGAAAAATAGGAATATAGTCAAGAGATGGTAATAAATAAATTA
CCCCCGCGCCCCCCAAATAACTTTGTATTATGAAAACGGACATATGCTTA
TTTTTTCATCTTAAATGGCGGTCGCAGGGTTTTTTCTTATCCTCCTGTTT
TCGTTATGGCGGCCTTTTTGGTTTATGTTTTTGTGGTAACACTTACGGCC
CAATACGACAGAATTTTTTATACACGCCGTCGATTTTGGGTCCTTCGCTC
CTCTCTCATATTTACGAAATAATCCCTATCGGGTTGTATAAGCACTCAAC
CCATTTGGGGGCGTATCTGGCGGGAGATCGGTGGATTGTCTAAGCGCTCC
GCAACCAATTGCCGAGTACTCATTCGTGTCGAAGGCGAGGGACTCTTGCG
AAGGGGACGAAAAACGCAAATAATAGTTACACCTTATACAGCCACCAAAC
GGGAAAGACTGCGCTTCACAATAATCAATGGGCGGGGGGGAGATGGGTGG
GGGGAGGGAAACCACCCCATCGGGGAGGTGGCACGGGGGAGGTAGAATTA
AAAACTGGGGGGGAGCATAAAAAAACGTCGGGCGGCGGGGGGGGGGATTT
ATAGTTCACACATTTGGGGGGGGGAGGTGAGGGGACCCACACTGAAATGG
GTAATGTTGGCGGCGCGGGAATATCCCACCCTGGGGCGGACTGGGTGGGA
TCAAACTGAGAAGAAATCACCCAACCAACCTAGAAGGTTATAGACGATAC
AACTCCCGGGGCGAGAGAAGGAAAACAAAAAGAGGAAGAGAGAGGGCGAA
AAACAAAACTAAGTAAGGCACCGACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XAGTGACCACGTGCCGTTGTTATCATCCTTTCTAATACAGAGCAGAGTTC
AGCCACACACCACAGGATAAATACGTGTGTAATACTTCAACTTTCTAAAA
TCCGGCCAGGGAAGGAATATATTTTAGCCTGGAATGTAGAGGAAATATCC
CAGAGAGAAAATCCTTTATCAAGTTAGAAGCTAGCACATCACAGAAAGTT
GGCTACCCACATCCAGTTTCAGTGTGTGGCCATTTTAGAAACATCAAAGA
GAATGTCCACAGGAGTTGATCAGCAAAAAACGCCTGGAGCCTGCATGATT
ATGGAACAGCAGGACAGAACGTGTGCTGAAACTCTTTCCCTTCCGTGAGG
GTAACCAGCTCATAGTAACCACTAGGTAAATGTGTGGAGTCATCAGCTAT
TACTACCTTCTCTGAACAACAAATGCAGCACTAAGCAAAGAATGAGTTGG
GGCCTTTACAGACTTTCACACTGAAGCAAGAAGGCTGCAAGAGGGTCAAG
AGAACCCGGTGGGTAGACGCACGTGTCACCAGGTCTGAGCTTGATGACCA
CCTGAGCTTCTTCCCTAGGATCCTTATGGCACCAGGCGATAATCTCATTC
CCACCAGTTGCCCCGCTGATTTCTTAAGGGCCCTTTATGACCCTGGTGTG
CAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_m10.g1 MSMg01no097_m10.g1 CHROMAT_FILE:
MSMg01no097_m10.g1 PHD_FILE: MSMg01no097_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:38 2005
         (244 letters)



>mm_chr4_49889629_49890272
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaccacgtgccgttgttatcatcctttctaatacagagcagagttcagccacacaccac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 tgaccacgtgctgttgttatcatcctttctaatacagagcagagttcagtcacacaccac 385

                                                                       
Query: 61  aggataaatacgtgtgtaatacttcaactttctaaaatccggccagggaaggaatatatt 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 aggataaatacgtgtgtaatacttcaactttctaaaatccagccagggaaggaatatatt 325

                                                                       
Query: 121 ttagcctggaatgtagaggaaatatcccagagagaaaatcctttatcaagttagaagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttagcctggaatgtagaggaaatatcccagagagaaaatcctttatcaagttagaagcta 265

                                                                       
Query: 181 gcacatcacagaaagttggctacccacatccagtttcagtgtgtggccattttagaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcacatcacagaaagttggctacccacatccagtttcagtgtgtggccattttagaaaca 205

               
Query: 241 tcaa 244
           ||||
Sbjct: 204 tcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)