Query= MSMg01no099_d12.b1 MSMg01no099_d12.b1 CHROMAT_FILE:
MSMg01no099_d12.b1 PHD_FILE: MSMg01no099_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:35 2005
(423 letters)
>mm_chr4_44774743_44775565
Length = 823
Score = 804 bits (416), Expect = 0.0
Identities = 421/423 (99%)
Strand = Plus / Plus
Query: 1 tcaaccaaatcagaagaacttaatcgtcctttcagatagtgaggtcatccagctatctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaccaaatcagaagaacttaatcgtcctttcagatagtgaggtcatccagctatctga 260
Query: 61 tacatcagaggtcatcacattatctgatgaagatagtatttatagatgtaaaagaaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatcagaggtcatcacattatctgatgaagatagtatttatagatgtaaaagaaaaaa 320
Query: 121 tattgaagtccaagtggaagaaaagacccagagccctgctacttctcattctaataaagt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgaagtccaagcggaagaaaagacccagagccctgctacttctcattctaataaagt 380
Query: 181 ggctcagaaatgcaagaggaataataagaagcctaaacctgaagagaggccaggtgtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctcagaaatgcaagaggaataataagaagcctaaacctgaagagaggccaggtgtgat 440
Query: 241 ccgagaggtcatgatcatagaggtcagttcaaatgaggaggaagaaagtaccacttcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgagaggtcatgatcatagaggtcagttcaaatgaggaggaagaaagtaccacttcaga 500
Query: 301 gaacgaaaatgtggaaagctggatgctcctggggtctgaggaagatggnaaagacaatga 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gaacgaaaatgtggaaagctggatgctcctggggtctgaggaagatggtaaagacaatga 560
Query: 361 catccttctcaacttggtggggtgtgagaccgctggtgctgaaggttagtgtcgtattga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catccttctcaacttggtggggtgtgagaccgctggtgctgaaggttagtgtcgtattga 620
Query: 421 ctg 423
|||
Sbjct: 621 ctg 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_d12.g1 MSMg01no099_d12.g1 CHROMAT_FILE:
MSMg01no099_d12.g1 PHD_FILE: MSMg01no099_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:35 2005
(428 letters)
>mm_chr4_44926434_44927262
Length = 829
Score = 768 bits (397), Expect = 0.0
Identities = 421/429 (98%), Gaps = 1/429 (0%)
Strand = Plus / Minus
Query: 1 tttcaaagtaccgagtcactagtaaaaagggatacaattttctctgggatgacatgacta 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tttcaaagtacagagtcactagtaaaaagggatacaattttctctgggatgacatgacta 570
Query: 61 atatatatgtttctaaagagacaaaacaaaaaaattcaaagtgtgccatattttaaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atatatatgtttctaaagagacaaaacaaaaaaattcaaagtgtgccatattttaaaatg 510
Query: 121 taaacacctacaaatggaatttaactgctacatatttaattattaatcacttttccctgt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taaacacctagaaatggaatttaactgctacatatttaattattaatcacttttccctgt 450
Query: 181 aacgaataaacatagttcatttgtaactaaaaatgaacataacaggggcggaggggtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aacgaataaacatagttcatttgtaactaaaaatgaacataacaggggcggaggggtaaa 390
Query: 241 ggatgataaaatgtctaaatgtaactttctacctttctgttagattagaaaattaatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggatgataaaatgtctaaatgtaactttctacctttctgttagattagaaaattaatgac 330
Query: 301 tataagaatttctttcaaatttaaagcagccctcacactagaagctcatctagtgactat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tataagaatttctttcaaatttaaagcagccctcacactagaagctcatctagtgactat 270
Query: 361 gctaatcctgagtgtgcgggtcattctctctagccaatatgagag-tgtaaaagcacaga 419
|| ||||||||||||||||||||||||||| ||||| |||||||| || ||||||| |||
Sbjct: 269 gcgaatcctgagtgtgcgggtcattctctccagccagtatgagaggtggaaaagcagaga 210
Query: 420 gactttatg 428
|||||||||
Sbjct: 209 gactttatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space: 343580
Effective search space used: 343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
