CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCTACCCTCTCCATAACTACTACCACCACCAAAGCCACCAGAGCCCAAA
TGTCTTTTCTACAGTAAACTCACTTTTCTTCTCCTCCAAGAAGGCTCTCC
AAGCAGGTCTGTTCATGTTACAAAGCAGGGCATTTGCAAACATTAGTCTC
TGAGAATATGCAGTAATAGGGAATCGCTGACTATTAAAATCATGAAAGTC
AAAAAATGCCTATGGCATCAGTAACTGTGGATTGTTCATCAATGCTAATT
CATTATGGTTTAGATTCTTTTTTATTAAAGCAATGCAGATGTTTTAGCAA
ATATCAGCAACATCATATCTGTGATTATATATATTCTGTATAATATTGAT
TGATATGAGAGGTGCTACAGATAAAGAAATTTTAAATTAAAAGACACTTT
TCTGACTAACATTAAAAAAAATGTCTTTCCTGTCTAAAAGAAGGAAAAGG
AAAGAAGAGAAGAGGGGATATTTGATGAGCTGAGTTGTCTCAGGACTGGA
TCTAATAAGTGCATGACTTACCTCATTTTAGACTTTTAACACTCATAATT
TACATAAAAATAAAAGTAAAATAAATACATAAAAATAAACAATTTTCAAA
AGAGAAAGTTTATGAGCACAGAAACCATAGACATAGCAAGATTTTAAACT
CTAAATCTTGAAAN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTG
GGTTCTTCTCAGCCAAACAAGGGTCTCCTGGAGGATCTCTGCCTTCTCTG
GAGACTAAAGGTAGAGCAAGAGCAGAGTATGCCTACATATAGACTGGTCC
AGGAGAAGACAGGAGGGAAGAGACATGCCAAATAATGGAGACTTTTGGGC
ACCTCCACCCTGCTTCCTTTTAGAATTGTGCCTAGTAGGCACTAGAGTGT
CACCAGGCCAGTGAGTTCTATTACCACGAGCCAACTGCTTAACAGAGTGA
GAGGCAGTGTTAACTTTAGGTCTGTCTCATTCCACACCACTTCCACAGGC
AGCAGTACCAGCATCGGGAAACCCGGATCGGTGGAATGGCAGGCACGTCA
TTCAGTGCACTGTAATCCCAGCATCTCCAGAGTACTCACTATCATTTTCT
TCATATAAAAACTTGCTCTGTTTTTCATTTTTCCATAATTACGTTATACC
TCTACTGGAGGTATGTCGGCTTGTCGTTAAGTTTTAAAAGCAGATAAAAA
GCCCCTGTTCCAAAGTAATCCCTCCCACATTACATTTACCGAAACTATTG
GATTTTCACCCTCATCCCAGCACCC

Query= MSMg01no099_e10.b1 MSMg01no099_e10.b1 CHROMAT_FILE:
MSMg01no099_e10.b1 PHD_FILE: MSMg01no099_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:40 2005
         (564 letters)



>mm_chr4_54216499_54217462
          Length = 964

 Score = 1075 bits (556), Expect = 0.0
 Identities = 562/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaccaccaccaaagccaccagagcccaaatgtcttttctacagtaaactcacttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 actaccaccaccaaagccaccagagcccaaatgtcttttctacagtaaactcacttttct 705

                                                                       
Query: 61  tctcctccaagaaggctctccaagcaggtctgttcatgttacaaagcagggcatttgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tctcctccaagaaggctctccaagcaggtctgttcatgttacaaagcagggcatttgcaa 645

                                                                       
Query: 121 acattagtctctgagaatatgcagtaatagggaatcgctgactattaaaatcatgaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 acattagtctctgagaatatgcagtaatagggaatcgctgactattaaaatcatgaaagt 585

                                                                       
Query: 181 caaaaaatgcctatggcatcagtaactgtggattgttcatcaatgctaattcattatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 caaaaaatgcctatggcatcagtaactgtggattgttcatcaatgctaattcattatggt 525

                                                                       
Query: 241 ttagattcttttttattaaagcaatgcagatgttttagcaaatatcagcaacatcatatc 300
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttagattcttttttaaaaaagcaatgcagatgttttagcaaatatcagcaacatcatatc 465

                                                                       
Query: 301 tgtgattatatatattctgtataatattgattgatatgagaggtgctacagataaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtgattatatatattctgtataatattgattgatatgagaggtgctacagataaagaaa 405

                                                                       
Query: 361 ttttaaattaaaagacacttttctgactaacattaaaaaaaatgtctttcctgtctaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttttaaattaaaagacacttttctgactaacattaaaaaaaatgtctttcctgtctaaaa 345

                                                                       
Query: 421 gaaggaaaaggaaagaagagaagaggggatatttgatgagctgagttgtctcaggactgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaaggaaaaggaaagaagagaagaggggatatttgatgagctgagttgtctcaggactgg 285

                                                                       
Query: 481 atctaataagtgcatgacttacctcattttagacttttaacactcataatttacataaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atctaataagtgcatgacttacctcattttagacttttaacactcataatttacataaaa 225

                                   
Query: 541 ataaaagtaaaataaatacataaa 564
           ||||||||||||||||||||||||
Sbjct: 224 ataaaagtaaaataaatacataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no099_e10.g1 MSMg01no099_e10.g1 CHROMAT_FILE:
MSMg01no099_e10.g1 PHD_FILE: MSMg01no099_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:40 2005
         (402 letters)



>mm_chr4_54117171_54117972
          Length = 802

 Score =  725 bits (375), Expect = 0.0
 Identities = 393/399 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggttcttctcagccaaacaagggtctcctggaggatctctgccttctctggagactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggttcttctcagccaaacaagggtctcctggaggatctctgccttctctggagactaa 260

                                                                       
Query: 61  aggtagagcaagagcagagtatgcctacatatagactggtccaggagaagacaggaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtagagcaagagcagagtatgcctacatatagactggtccaggagaagacaggaggga 320

                                                                       
Query: 121 agagacatgccaaataatggagacttttgggcacctccaccctgcttccttttagaattg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 321 agagacatgccaaataatggagacttttgggcacatccaccctgcttccttttagaaatg 380

                                                                       
Query: 181 tgcctagtaggcactagagtgtcaccaggccagtgagttctattaccacgagccaactgc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 381 tgcctagtaggcactagagtgtcaccaggccagtgagttctgttaccacgagctaactgc 440

                                                                       
Query: 241 ttaacagagtgagaggcagtgttaactttaggtctgtctcattccacaccacttccacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaacagagtgagaggcagtgttaactttaggtctgtctcattccacaccacttccacag 500

                                                                       
Query: 301 gcagcagtaccagcatcgggaaacccggatcggtggaatggcaggcacgtcattcagtgc 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagcagtgccagcatcgggaaacccggatcggtggaatggcaggcacgtcattcagtgc 560

                                                  
Query: 361 actgtaatcccagcatctccagagtactcactatcattt 399
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 actgtaatcccagcatctccagagcactcactatcattt 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)