BAC Information

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BAC

Clone NameMSMg01-099F07
Chromosome4 (Build37)
Map Location 84,226,699 - 84,227,262
singlet/doubletsinglet
Overlap genenone
Upstream gene4930473A06Rik, LOC668010, Bnc2
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099F07.T7 (MSMg01no099_f07.b1)MSMg01-099F07.TJ (MSMg01no099_f07.g1)
ACCAG315292AG315293
length6992,103
length of high quality
(start - end)
568 (50 - 617)---
definitionCHROMAT_FILE: MSMg01no099_f07.b1 PHD_FILE: MSMg01no099_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:45 2005CHROMAT_FILE: MSMg01no099_f07.g1 PHD_FILE: MSMg01no099_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTCAAGCCCACCCCATTGCCCTCCAATCTGGACCTAAGTCA
ACAATCTACTGGGATGGGAACCCAGTTCCCACCCAGAACCACTTAATGAA
AAATTTCTATCTAACTAGAATCCCTCCAGCTGCAACCTAAGTCCGTTTGT
TTATTTTTACTCAAATAGCTAACAGCTGGCACCACCTTCCATGTAAAAGC
ACTTCATGTGTTTGGAAACAGTGATTAACTCATACCTTGCTTTTCGAATC
TCTAGGCCACAGAACGAAGACCATTTCTGAGCATTTTTAAACATTTTCTA
CTTTTACCTTCAGGCTCACGTCCTGTTTAGTTTGGAATCATTAAGTTATC
AATAATGGGCGTATTGCAGTATGGTAATTAGAGGGGGAACATTTCTATGC
TCACCTTAAAAATCAAATGTAACCTCTAAGGTGGGCTCTGGCAGAGGCTG
GCTGAAGGCTGTTCTTACACAAATTTGTACTGGTAAAAACAATTCCCTCG
TCCAGTTTTACAAAATAAAGTCGGGTTCAGTTGGAGAGAAAAGACCTCAC
AATTCTGAGAAGCTTAATCATTTTATAAGCCATTGTTAGAGACAAAAGTT
GGGAGAACAGTTTAATGCTGGCAAGCTAGCATCTGGCCATCTTACATTT
TTGTTTTTTCTTGGCGTCGCGCGGCTGTGTTGTTTTTNCGCTTTCTNNCC
CNTATGTCTTCGCCGTTTCTCTCNCCGCGCGCGCTCTTNTNCGGCCGCCT
CTTCTTCTTTCGCGCCGGCGGNCGTCTGCTTGTTTTATCGTCGCGTNTCT
TTTGTNGTGGCCCGCGGCGCNGGCGACGAGGAGGCGGAGCNGTGGGGAAA
TTACATTACGCGTGGTGGTTATGTTGTGCGTCTCGCTTCTTATCTCATAT
AACGCGTCGCCCATCGACATNATATACTACACTCGCTTATTCCTTTATTA
TATTTCATCTATATTTCATTATATTATACTCACTCTGCGTCTCCGCCGCT
ATATTACATATATATACACCGCGCACTCGTTTGANCTCACATACTACATA
ATATATCACTGCGTTCGCGAGTCGCTGTATATCTATAACACATATTGCTA
TCGCGCGCAGTATATCAGTATGAATGNCTCATCACGTGCTCTACTCTACG
ACTCGTACTTAACACAACTGTGTACGTTAGTCGATGTACGATCGCGTATA
TTCTGACGGCGGGTGGCGGNTCATATCTATCATNCATTGATAGTCTCGTG
TCGCGCGTTCGCGCTGTCTGTTTATACTCTCTGTGGTTATGTCTGATCGC
ACTCNGCGCGCGCGTTCGTCGTCTATCGTCGCTCGTCGATATCATACTAT
CTCTNTATATTATTACTCGACACGCGCGNCCCTCCATCAACGATAATATG
TAATCANGACCTANCTAGAGTCGTATACATTACTACGCTTAGCAGTATAT
TAATAGACGACTACGGCTCGACCGACGAGTCGTCGTCTACTCGTTCGATA
TGTCATACTTATATATGATTATATTNCGATTNATNTAATAGTATAACCAC
TCACGTTACTCGCATCGACTCTGCTGCTTGTCTGCGTCTGCTGTCTCAGA
TATAGCTGCATGTGACGATCTGGATACATGATAATATTATCAGTCATANC
ACGCGCTGCTCCTGTCGATCGTCTCGTCGCTGCTANAATTATATCATCGA
GACTACCACGAGAAATATATACTAAATATGTGCGTCGACGCACGAGCGCG
TCGGAGAGAGTGGTGAGTATATTACTAGTGTGAGTGAGTAATAGCGATAT
GCTCNGGGATTGTCTGAGTTCTCACAGCACACTGTAGTGCGATCTAATGT
ACTATGACCGATGTGCTCCTAAGTATGATATTCGCATCGTCTCATATCGT
NCGCGCCGCGTCTTCGCTNCCTCTCTATTAATCATTACTATATATAGTTA
TGTGCGCCGCGCTCGGCGTCGCAAGGACTATACACGACTATACCACCTCT
GTTATNTCGANCGCATGAGAGTACTATAATTGAGATTGAGGATNATGAGT
GTTAATCTATTTCATGCTCTNTGGAGCGTACATCGACGGCTCGTGCGTAT
AGTCTAGATGTGATGACATGTAGTACACGTGCTTGCGCGAGAGTTGCTGC
GCACTCATCATCTCTAATCTCATCGTATNATCACTACATATATCANACAC
CGCTTGAGTATTATGATTTATACTACTATGCCATCTATATAGACTGTCTA
TCGTATATNCNACCTCCGCGCACACCGCTCACATANACATATCATACCGT
CACTACTCGCCAGTTCGCGTATATGTGCGTGAGTTATCGNCCGCTCGACG
CAGTATGCTGACTGTATATATCTGCGACGCGCGTTACGCTCGCGCTANTA
AGATATATAGATTCANTACGACTCTCGACACTCGCATATCTCGACGCCAT
ACACGAATCATATCTAGGTATATAGATATTACGATATCGATGATGGGGAC
GNCGAGCAACGCNCTGTCACTCTTTTATGATCGTATACGCTCATGATGTC
ATTATCATCGCGATGCTCTCGACGGTCGCGTACGNTGATCACGCTAAGCG
TATCACCGTCGTCAGACACCGTCGCAACGTAGTATATAATTTACGTCGAT
ATCACGAATACACGTACTNGACGACGACGCGAGCGAGCGTCATAGTATAT
CGACACGATACGCTGCGTTGAGCTGTCTCGTCTCGACTATGCGTATACTC
TGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_f07.b1 MSMg01no099_f07.b1 CHROMAT_FILE:
MSMg01no099_f07.b1 PHD_FILE: MSMg01no099_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:45 2005
         (568 letters)



>mm_chr4_84226495_84227462
          Length = 968

 Score = 1075 bits (556), Expect = 0.0
 Identities = 562/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcaagcccaccccattgccctccaatctggacctaagtcaacaatctactggg 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaagcccaccccactgccctccaatctggacctaagtcaacaatctactggg 264

                                                                       
Query: 65  atgggaacccagttcccacccagaaccacttaatgaaaaatttctatctaactagaatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgggaacccagttcccacccagaaccacttaatgaaaaatttctatctaactagaatcc 324

                                                                       
Query: 125 ctccagctgcaacctaagtccgtttgtttatttttactcaaatagctaacagctggcacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccagctgcaacctaagtccgtttgtttatttttactcaaatagctaacagctggcacc 384

                                                                       
Query: 185 accttccatgtaaaagcacttcatgtgtttggaaacagtgattaactcataccttgcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accttccatgtaaaagcacttcatgtgtttggaaacagtgattaactcataccttgcttt 444

                                                                       
Query: 245 tcgaatctctaggccacagaacgaagaccatttctgagcatttttaaacattttctactt 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 tcgaatctctaggccacagaacgaagatcatttctgagcatttttaaacattttctactt 504

                                                                       
Query: 305 ttaccttcaggctcacgtcctgtttagtttggaatcattaagttatcaataatgggcgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaccttcaggctcacgtcctgtttagtttggaatcattaagttatcaataatgggcgta 564

                                                                       
Query: 365 ttgcagtatggtaattagagggggaacatttctatgctcaccttaaaaatcaaatgtaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgcagtatggtaattagagggggaacatttctatgctcaccttaaaaatcaaatgtaac 624

                                                                       
Query: 425 ctctaaggtgggctctggcagaggctggctgaaggctgttcttacacaaatttgtactgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctaaggtgggctctggcagaggctggctgaaggctgttcttacacaaatttgtactgg 684

                                                                       
Query: 485 taaaaacaattccctcgtccagttttacaaaataaagtcgggttcagttggagagaaaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaaaacaattccctcgtccagttttacaaaataaagtcgggttcagttggagagaaaag 744

                                   
Query: 545 acctcacaattctgagaagcttaa 568
           ||||||||||||||||||||||||
Sbjct: 745 acctcacaattctgagaagcttaa 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)