BAC Information

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BAC

Clone NameMSMg01-099H04
Chromosome4 (Build37)
Map Location 25,598,861 - 25,599,261
singlet/doubletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099H04.T7 (MSMg01no099_h04.b1)MSMg01-099H04.TJ (MSMg01no099_h04.g1)
ACCAG315382AG315383
length688842
length of high quality
(start - end)		639 (45 - 683)39 (77 - 115)
definitionCHROMAT_FILE: MSMg01no099_h04.b1 PHD_FILE: MSMg01no099_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:56 2005CHROMAT_FILE: MSMg01no099_h04.g1 PHD_FILE: MSMg01no099_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:56 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGCCCATGAGAAATGTGGATTGTGAGTCTGTATGGAGTGCATCT
CTGCTCAGAGCTCTGTCACCTGAGAATTTAGGGGAGCTTTGTTCTGCAAA
ATAGTGGGGAATATTTCTTCGAACCTATGAATGTGCTCTGGGGCTACGTA
TACAGAGCCATGAAGGAAGTAGAAAGTCCGGGCTGATGGGAAAGTCGGTC
CCTCAAGGTATGTGCATTTGGTCTGACATCAGGTAAAGAATTTCCACTCA
CCTTGGGCAGTAAAGAAAGAACAAATAGTAGAATTTTATTTTTTACATTC
TCCTTGAGAGATTTCTTTTCCCCCTCTGTGTTAAAATAAGATTATCTCCT
TTGGACAGTTTAATGCATTTGGGAGAAAATTCTATTATATGTAATTATGA
TGATCTGTCCTATGAAGTAGAAGTTACCCTAAGGCTAACAATACTATAAA
ATTTAACCAAAGCATTTTTGCCTCAAGTACAGGTCTCCTCACTTTTCTTT
ATAGCCTAAATTTAACATTTATTTAAGTATCGTTCCAAAATGACTGTATG
TTAAAACCTTTTCTAGATGTTATGAAGCCCTAATGACTTAGGAAACCATA
TTTCCAAAACATGAATTAGCATCTATTTTCTAACTAAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTACATACAAGTTTGTGCGAT
TTGGATTTCCTAGCTTCCCCGGTATTTCAATAATCAACACCTGAATTAAC
CACCGTTATTCTTTATTCTCCAAACTGTTTCCCCTTTGTTCCATTCTCCC
TCTTCCCCCCTCTTTTACTCCCTCCTCCCTTTTTGCTCCCCTTTATTTCT
CTTCCTCACTTTCTACCAACTCCCTGCCTCTCTTTCCTTCTTTTCCCCTC
TCTTCTTCTTTACTTTTGCCCTTCTCTTCTTTTCCCTTTTTTTTCCTCCC
CTCTCATTCTCTTTCCCTTTACTCTTCTTCCCTCCTCTCCTCTTTTTTTC
CCCCCCGTCCTTTTCTCCCTCTCCTCCTCCCCCCCTTTTTCTCTTTTCAC
CCCACCTTTCTTTTTTTTTTATTCCTCCTTTCGCCCCCCTTTTTTTTCCT
TCCTCCTTTCCTTACTACTACTTTCCTCCCTCTCCCATCTTTCCTTTTAT
TCTCCTTTACCCCTAACCTATATTATTATTCCCTCATTTACCTTTCTCCC
CCCCCATTTTCTATTTATCTTTCTCTCTCACCCCCCTTATTCTTCTCTCC
TTCCCTCCCTTTTTTTATATTCTTTTTTCCCCCCCTCCCCCATTTCACAC
TCTTTTACTATTCATCCTCGTTTATTTTTACCCCCCCTCTCTTTCCACCC
CTTCTATTTATTCCCCCTCTTCCTTTTTCTCCCTCTCTTTCTTCTTTTCT
TTGGCCCTCCGCCCCCTCTTTCTGTTTTTTTATCTTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_h04.b1 MSMg01no099_h04.b1 CHROMAT_FILE:
MSMg01no099_h04.b1 PHD_FILE: MSMg01no099_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:56 2005
         (639 letters)



>mm_chr4_25598423_25599461
          Length = 1039

 Score =  775 bits (401), Expect = 0.0
 Identities = 401/401 (100%)
 Strand = Plus / Plus

                                                                       
Query: 239 gtaaagaatttccactcaccttgggcagtaaagaaagaacaaatagtagaattttatttt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtaaagaatttccactcaccttgggcagtaaagaaagaacaaatagtagaattttatttt 498

                                                                       
Query: 299 ttacattctccttgagagatttcttttccccctctgtgttaaaataagattatctccttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttacattctccttgagagatttcttttccccctctgtgttaaaataagattatctccttt 558

                                                                       
Query: 359 ggacagtttaatgcatttgggagaaaattctattatatgtaattatgatgatctgtccta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggacagtttaatgcatttgggagaaaattctattatatgtaattatgatgatctgtccta 618

                                                                       
Query: 419 tgaagtagaagttaccctaaggctaacaatactataaaatttaaccaaagcatttttgcc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgaagtagaagttaccctaaggctaacaatactataaaatttaaccaaagcatttttgcc 678

                                                                       
Query: 479 tcaagtacaggtctcctcacttttctttatagcctaaatttaacatttatttaagtatcg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcaagtacaggtctcctcacttttctttatagcctaaatttaacatttatttaagtatcg 738

                                                                       
Query: 539 ttccaaaatgactgtatgttaaaaccttttctagatgttatgaagccctaatgacttagg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttccaaaatgactgtatgttaaaaccttttctagatgttatgaagccctaatgacttagg 798

                                                    
Query: 599 aaaccatatttccaaaacatgaattagcatctattttctaa 639
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aaaccatatttccaaaacatgaattagcatctattttctaa 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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