BAC Information

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BAC

Clone NameMSMg01-099P02
Chromosome4 (Build37)
Map Location 5,916,705 - 5,916,913
singlet/doubletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309
Downstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099P02.T7 (MSMg01no099_p02.b1)MSMg01-099P02.TJ (MSMg01no099_p02.g1)
ACCAG315762AG315763
length839706
length of high quality
(start - end)
209 (141 - 349)53 (238 - 290)
definitionCHROMAT_FILE: MSMg01no099_p02.b1 PHD_FILE: MSMg01no099_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:38 2005CHROMAT_FILE: MSMg01no099_p02.g1 PHD_FILE: MSMg01no099_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTTTTAACTCCTTTCCCCCTTTTCTTTCCTNTTTTTCTACTTTTCCC
TCCTCATTAACTCCCCCCTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCAAAAAGGATCCGCGGAATTCTCACGTTCCCCCCTGTACTTGTCTT
GGCATTGTCATGGGCCCTCTCCTCTGACCTTCCCAGTTCCTGATGACAAC
CCAATTGCGAATCATTGTCTCTGTGAATGTGGCATTAATATTCAATATTT
GCTATCGATTTGTTTTCTCTTGTTTACTGTATCATGCTATAGCCTGGGAC
TGCTGTATCCATTGTATTGCTATTTGGAGATCCTCATGTATCTAATCATT
TTCATAACTCTGTCATCAAATCAAATAAATATCCAGTTATTATTTCTTCA
AAAAGACGCTTTTGTTTCCCTTATCTTCCTATCTGATATTCTTATGCATT
TAAGCGTATATCACTCATGTGTGCGTGTTTGTATCTGTGTGTGTGCCGGT
TTTTATATCCGCTCCCCTTTTCCCCTTCTCTCTTTTTTATTCTTCTACTC
TTTTTCATTTTCCACCCCCTCCCCCATTTTTTCTCTTCCCTTTCTCTTCA
CTCTTTCCCTCTTTCCTCTTCCTTTTTTTTTTTCTTTCCCCCTTTCCCCC
CCTTTTTCCCTCTCTCCATTTTCCTTTCTTTTCCTTTATTTTTCCATCAA
CCAATTTCCTTACCCCTTCTCCTTTTCTCCTTCCATCCTCTTCCCCCGCC
GCTTTTTTTCTCTTCCCACTCCTTCTTTATTTTTTTACCCATCTCTCTTT
CATTCTCCTCACTCCCTCTTTCCTCTATTTATTTTTTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTAAGAAGGTTATCTATTCAGTAACATTCAAATTTATTTCTA
ATAGACACTGTGAAACTAATTAGGCATTACAAAGAATGGAGCTGGAATAG
GTCAGTGCTGGTCTGCAGAGTGTTTACTTGGGACAGTAGCCAGTCTTACC
CAGACAAGGGAATTTACAATGACCTAGGAATAGGTGGGTTTACCATGAAA
GAGTTAGGGAATCCCCCTGAGGCAGGTTTCTTCACTAGGCCCAAAGAACC
AGCTTATTTCAGGCATTTACTAAGAACCCCTCGTGGTCTGTGTTAGCATT
ACACCTGCCCCCCTTCTTAGCGGTAAATAGCAGTGGCCTGGTCCCCATCT
TCTTTTGACGTATACCTTCTTTTTGTATTGTGTCACTGTAACTCTCCCCT
GGCTTCTTGTCGCTCCTGCGTATAATAATGTTGCAGCTCGACTTGAATAA
ATTACATTCCGATTCCACACAAATCTCTTGTGTTGCTTCCCGTTTGTCTT
TCCTCCCTATGATTCCTTGTTTCCCCTGCCCTTATATACCTTGTTCTATT
GCCGTTTGTGTACCACCCTCTCGCTTCTGTGTTTTTATATCCATCTTCTT
TTGACCGCTTATCATATCTTGCTCCTCTGTGCCCCCCGGCATATTTTTAT
CTGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_p02.b1 MSMg01no099_p02.b1 CHROMAT_FILE:
MSMg01no099_p02.b1 PHD_FILE: MSMg01no099_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:38 2005
         (209 letters)



>mm_chr4_5916505_5917113
          Length = 609

 Score =  366 bits (189), Expect = e-106
 Identities = 204/209 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacttgtcttggcattgtcatgggccctctcctctgaccttcccagttcctgatgacaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tacttgtcttggcattgtcatgggccctctcctctgaccttcccagtttctgatgacaac 260

                                                                       
Query: 61  ccaattgcgaatcattgtctctgtgaatgtggcattaatattcaatatttgctatcgatt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 261 ccaattgcgaatcattgtctctgtgaatgtggtattaatattcaatatttgttatcgatt 320

                                                                       
Query: 121 tgttttctcttgtttactgtatcatgctatagcctgggactgctgtatccattgtattgc 180
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tgttttctcttgtttactgtagcatgctatagcctgggactgttgtatccattgtattgc 380

                                        
Query: 181 tatttggagatcctcatgtatctaatcat 209
           |||||||||||||||||||||||||||||
Sbjct: 381 tatttggagatcctcatgtatctaatcat 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)