BAC Information

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BAC

Clone NameMSMg01-100C08
Chromosome4 (Build37)
Map Location 119,769,686 - 119,894,748
singlet/doubletdoublet
Overlap geneHivep3, Edn2
Upstream geneSlc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneFoxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100C08.T7 (MSMg01no100_c08.b1)MSMg01-100C08.TJ (MSMg01no100_c08.g1)
ACCAG315917AG315918
length691677
length of high quality
(start - end)
496 (38 - 533)476 (56 - 531)
definitionCHROMAT_FILE: MSMg01no100_c08.b1 PHD_FILE: MSMg01no100_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:55 2005CHROMAT_FILE: MSMg01no100_c08.g1 PHD_FILE: MSMg01no100_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,769,686 - 119,770,177)(119,894,409 - 119,894,748)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
TGTCCCCAGCGCAGCCAGACACTGGCACAACTTCCAGCGGAGAAGCTGCC
ACCCAAGAAAAAGAGACTCCGCCTGGCTGAGATGGCGCAGTCCTCGGGGG
AGTCCAGCTTTGAGTCCTCCGTGCCTCTGTCTCGAAGCCCAAGCCAGGAG
AGCAGCATTTCTCTGAGTGGCTCCAGCCGCTCGGCTTCATTCGACAGGGA
AGACCATGGAAAAGCTGAGGCCCCTGGACCCTTCTCAGACACACGCTCCA
AAACCTTGGGCTCCCACATGCTGACTGTCCCCAGCCACCACCCACATGCC
CGAGAGATGAGACGGTCAGCCTCGGAGCAGAGCCCCAATGTGCCCCATTC
CTCACACATGACTGAGACCCGAAGCAAATCCTTTGACTACGGCAGCTTGT
CCCCTACAGGACCATCCTTAGCAGTGCCTGCTGCTCCGCCACCCGCAGCC
GCCCCGCCAGAAAGAAGACAATGCTTTCTGGTACGTCTAGGCTCCCTGAA
CAGACCTCCAGAAGCCGAGCTGGAGGCTGTGCCCAAGGGAAAACAAGAGA
GCGGTGAGGAGTCCGCAGCCAGCAAGCCTTCCACAAAAAGCTCTGTGCCC
CAGATCTCTGTGGGCACTACCCCAGGTGGGCCCTTCAGAGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGGCTAGCCTGGGCTATGTATCAAGACCCTGTCTCAAAAAAACA
AAAACAAGAGCCAGCGAGATGGCTCAGTGGGTAAAAGCACTTGTCATCCA
AGCCTGGTGTCTCTCTCTCCTTCCCCCATCTCCCCTCCACTCCCCTCCCC
TCCTTCCTCTCCTCTTCTCTTCTCTCATGAACCCACACTGGTACATCTTG
CTAGGCATGGTGGCTCACAACTGTAATCCCAGCTAGTAGAGAGGATGAGG
TAGGAGAAGTGCAAGTTTGGTCCAGGCCTGCTTAGGCTGCAGAGTAAGCT
CAAGGTAAACACGAACGACTTCATGAATCCCTGTCTCACAATAAAAGCAG
GGCATGTGGCTCTGTGCCAGAGAGCTTGCCTAGCATGCTATTGCCTGGGC
TATTATCTTCAGGACCACGGGAACAAATAAACGCAACCAGGCTTGTCAGC
AGCTCTTTACAGAACGCTTGGGTTCTTGCTAGCCTGGCCACCCTGCTTGC
CACTTTGCAAATGCTCTTAGAGCTCTCTCCACAGTGCAGACTCCTCTTCC
GTAGGATGTGTCACCCCCTCAGGGTCTTTGGTGCAACTGTACAATGCTAG
CTGATGACATGGAGTTTTATCTAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_c08.b1 MSMg01no100_c08.b1 CHROMAT_FILE:
MSMg01no100_c08.b1 PHD_FILE: MSMg01no100_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:55 2005
         (496 letters)



>mm_chr4_119769482_119770377
          Length = 896

 Score =  913 bits (472), Expect = 0.0
 Identities = 487/492 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtgtccccagcgcagccagacactggcacaacttccagcggagaagctgcca 64
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattccagtggccccagcgcagccagacactggcacaactcccagcggagaagctgcca 264

                                                                       
Query: 65  cccaagaaaaagagactccgcctggctgagatggcgcagtcctcgggggagtccagcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccaagaaaaagagactccgcctggctgagatggcgcagtcctcgggggagtccagcttt 324

                                                                       
Query: 125 gagtcctccgtgcctctgtctcgaagcccaagccaggagagcagcatttctctgagtggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtcctccgtgcctctgtctcgaagcccaagccaggagagcagcatttctctgagtggc 384

                                                                       
Query: 185 tccagccgctcggcttcattcgacagggaagaccatggaaaagctgaggcccctggaccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccagccgctcggcttcattcgacagggaagaccatggaaaagctgaggcccctggaccc 444

                                                                       
Query: 245 ttctcagacacacgctccaaaaccttgggctcccacatgctgactgtccccagccaccac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctcagacacacgctccaaaaccttgggctcccacatgctgactgtccccagccaccac 504

                                                                       
Query: 305 ccacatgcccgagagatgagacggtcagcctcggagcagagccccaatgtgccccattcc 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 ccacatgcccgagagatgagacggtcagcctcagagcagagccccaatgtgccccattcc 564

                                                                       
Query: 365 tcacacatgactgagacccgaagcaaatcctttgactacggcagcttgtcccctacagga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcacacatgactgagacccgaagcaaatcctttgactacggcagcttgtcccctacagga 624

                                                                       
Query: 425 ccatccttagcagtgcctgctgctccgccacccgcagccgccccgccagaaagaagacaa 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 625 ccatccttagcagtgcctgctgctccgccacccccagccgccccgccagaaagaagaaaa 684

                       
Query: 485 tgctttctggta 496
           ||||||||||||
Sbjct: 685 tgctttctggta 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no100_c08.g1 MSMg01no100_c08.g1 CHROMAT_FILE:
MSMg01no100_c08.g1 PHD_FILE: MSMg01no100_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:55 2005
         (476 letters)



>mm_chr4_119893873_119894748
          Length = 876

 Score =  627 bits (324), Expect = 0.0
 Identities = 336/340 (98%)
 Strand = Plus / Minus

                                                                       
Query: 137 cccctcccctccttcctctcctcttctcttctctcatgaacccacactggtacatcttgc 196
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 876 cccctcccctccttcctctcctcttctcttgtctcatgaacccacactggtacatcttgc 817

                                                                       
Query: 197 taggcatggtggctcacaactgtaatcccagctagtagagaggatgaggtaggagaagtg 256
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 816 taggcatggtggctcacaactgtaatcctagctagtagagaggatgaggcaggagaagtg 757

                                                                       
Query: 257 caagtttggtccaggcctgcttaggctgcagagtaagctcaaggtaaacacgaacgactt 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 caagtttggtccaggcctgcttaggctgcagagtaagctcaaggtaaacacgaacgactt 697

                                                                       
Query: 317 catgaatccctgtctcacaataaaagcagggcatgtggctctgtgccagagagcttgcct 376
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 696 catgaatccctgtctcacaataaaaggagggcatgtggctctgtgccagagagcttgcct 637

                                                                       
Query: 377 agcatgctattgcctgggctattatcttcaggaccacgggaacaaataaacgcaaccagg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agcatgctattgcctgggctattatcttcaggaccacgggaacaaataaacgcaaccagg 577

                                                   
Query: 437 cttgtcagcagctctttacagaacgcttgggttcttgcta 476
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cttgtcagcagctctttacagaacgcttgggttcttgcta 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)