Query= MSMg01no100_i22.b1 MSMg01no100_i22.b1 CHROMAT_FILE:
MSMg01no100_i22.b1 PHD_FILE: MSMg01no100_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:27 2005
(288 letters)
>mm_chr4_120060112_120060797
Length = 686
Score = 455 bits (235), Expect = e-132
Identities = 283/317 (89%), Gaps = 32/317 (10%)
Strand = Plus / Minus
Query: 1 caagccctatggaagcagatctctccctagcc-agcacagaggagaccccagccctggaa 59
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 352 caagccctatggaagcagatctctccctagccaagcacagaggagaccccagccctggaa 293
Query: 60 aatgcctccatctgttcctgatgacccacagaacccaggtcaccggcatgtggattaagt 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aatgcctccatctgttcc---tgacccacagaacccaggtcaccggcatgtggattaagt 236
Query: 120 ctctgagcttgtggtagtttgctgtagaagtgc------------------------atg 155
||||||||||||||||||||||||||||||||| |||
Sbjct: 235 ctctgagcttgtggtagtttgctgtagaagtgcattcgattcctgaccagcagcctaatg 176
Query: 156 gtttgtttataactccatgctgcctccctgtggcaatctccaattagaagctgtgtgtat 215
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 175 gtttgtttataactccatgctgcctccctgtggcaatctccaattagtagctgtgtgtat 116
Query: 216 ctgtgtgtgtgcttttaggtttttttgtttgcttgttttttt-gtttttcgagacaa--- 271
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 115 ctgtgtgtgtgcttttaggtttttttgtttgcttgttttttttgtttttcgagacagggt 56
Query: 272 ttctctgtgtcaccctg 288
|||||||||||||||||
Sbjct: 55 ttctctgtgtcaccctg 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 686
Length adjustment: 9
Effective length of query: 279
Effective length of database: 677
Effective search space: 188883
Effective search space used: 188883
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no100_i22.g1 MSMg01no100_i22.g1 CHROMAT_FILE:
MSMg01no100_i22.g1 PHD_FILE: MSMg01no100_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:27 2005
(411 letters)
>mm_chr4_119910531_119911341
Length = 811
Score = 708 bits (366), Expect = 0.0
Identities = 396/406 (97%)
Strand = Plus / Plus
Query: 5 gaattctttcatactacgtttcttcaggaggattcctgagggggactctgctgcatggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcatactacgtttcttcaggaggattcctgagggggactctgctgcatggtg 264
Query: 65 ccttctcttggggacccaggcttgaagagactccatgtccagcttccacaatgaggcaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccttctcttggggacccaggcttgaagagactccatgtccagcttccacaatgaggcaca 324
Query: 125 tggggcaacattgcatagtaccatctcccagtagcagctctggaaatgacaagtggccct 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 tggggcaacattgcatagtaccatctcccagtagcagctctagaaatgacaagtggccct 384
Query: 185 tggcccttggtcacacctccctacccccatgcaggtctcatggtctcacacaccacctcc 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 tggcccttggtcacacctccctactcccatgcaggtctcatggtctcacacaccacctcc 444
Query: 245 ctccaaggtttgggaagggtggtagcagctcagggtatatttggtagaaagcactaaagc 304
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctccaagggcagggaagggcggtagcagctcagggtatatttggtagaaagcactaaagc 504
Query: 305 ctacagtgggcagatccatggataagatctatggaggaaaatgccgcgaaggagagacag 364
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct: 505 ctacagtgggcagatccatggataagatctatggaggaaaatggtgtgaaggagaggcag 564
Query: 365 agggtgacatttatttctaattatggtggtagagtgagtcctctaa 410
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggtgacatttatttctaattatggtggtagagtgagtcctctaa 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
