BAC Information

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BAC

Clone NameMSMg01-101G01
Chromosome4 (Build37)
Map Location 142,411,310 - 142,411,622
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983, LOC546484
Downstream gene6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101G01.T7 (MSMg01no101_g01.b1)MSMg01-101G01.TJ (MSMg01no101_g01.g1)
ACCAG316806AG316807
length683899
length of high quality
(start - end)
398 (51 - 448)---
definitionCHROMAT_FILE: MSMg01no101_g01.b1 PHD_FILE: MSMg01no101_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:34 2005CHROMAT_FILE: MSMg01no101_g01.g1 PHD_FILE: MSMg01no101_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTCGGAGAGGAGCCGCGGAATTCAATATCTACCTTTATAAAAG
ATCAGTTATTTGATATTATTTTTATGTATGGCTCCTGGCCATTAGTCAGA
AAATAGAGAGTTGAATATATAGCATATAGTTATAACCCTAAAATAAGTTA
CACTCATACTAGCATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTCTATTTATTTATTATGTGTACAGATTTGTGG
AAGTCAGAGATGACTTGTGGGTGTCAGTTCCTTCCGCTTGAGGATTCTGG
ACGTGAAACTCAGGTGATTGGGTTTGGCGGCAAGTGTCTTTACCCACTGA
CCCATCTCACCGGACCTAGAATATTATTTCTGTTTTAGCTGTAGGTATTT
GCATGTTTTGCTTTCATGTGTGTCTGTGCACCATATGCTTGCCCCGTGTC
TGTGCAGGCCAGAAGAGGGTGTCGGATTTCCTGCAACTGGAGGTACAGCG
TTTATGAGCCACCCTGTGAATGCTGGCAACTGACGTGGGTCCTTCTACAA
GAACATATATTGCTCTGAACAGCGGAGCCACCTCTTTAGTCTCTACCCAA
CAGGTTTTGATATTCCCCTTATTTTTTTCTTGTCTTTTTTATATGTACGG
CCGCACTTATTCAATGTACATCCTGCCTGTCTG
CCGGCCCTCGACNCNATCTATTTTTTCTTCCCGCCGCCGGCCCCNCCTTA
TCTTATATACTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGGGAAGGTCGTG
GGATGGCTGTGCAGATTAACAGTATGAGTCGCGCACGTGTCTTGCCAGCG
TTCCTATTTCATACCAGGCGGAGCTTTGTTAATTATGACCAGAAGTCATG
GTCAGAGGAAAACTCTTATTAAGAGGGCAAAAGCCTCCCTTTCTGATTTA
TGCTGTTTTTTCTTATGTTGATTCACTTTATGTCCAGCCTTTGAACTATG
CCCTTTCTACGCCCACGACGTTTGGTTCTCCCTCTTTTTTTTGTTTTCCA
CCTCCTGCCCGCGGCATGTTTCTACCTTTTTTTCTTTGTTCTCACCTCCT
AATTGTTATCAAATATTCTAATAATGACAATTATTATTACTTTTTTACCC
TCCATTATCTAAATATTTTCTGTTATATATATATTTAATTATTTTGATGA
TTTAATATTATATTCTTTTCATCTACATTCACTTCCGCAAGTCTCACTCA
ATAGATTATTCATCTTGCTGTACTGCCTGTCTACCTTTTTCATTATTTTT
CCTCTCCTCTCATACGCCATTAATTATGTATCAAAGCGTGTCCTAGCCTC
CTACTTTTTCACTTTTCGCTCTCGTCTGCCTCGCTACCTGTCTTCTACAC
ACGCACCTATCTCCTACTTCGTGATGGTTTCATCACGTACGCCGACACGA
TCGGAATTATTTTTTATTATTAGAGCTCTACTATTATCTATACTTTGTAT
GTTTGATTCTTATTCTCGTTTTTCTTTCATATCAGTTGCATCTACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_g01.b1 MSMg01no101_g01.b1 CHROMAT_FILE:
MSMg01no101_g01.b1 PHD_FILE: MSMg01no101_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:34 2005
         (398 letters)



>mm_chr4_142411310_142412107
          Length = 798

 Score =  455 bits (235), Expect = e-132
 Identities = 302/345 (87%), Gaps = 34/345 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagttatttgatattatttttatgtatggctcctggccattagtcagaaaatagagag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 313 atcagttatttgatattatttttatgtatggctcctggccactagtcagaaaatagagag 254

                                                                       
Query: 61  ttgaatatatagcatatagttataaccctaaaataagttacactcatactagcatctatc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||       
Sbjct: 253 ttgaatatatagcatatagttataaccctaaaataagttacactcatattagc------- 201

                                                                       
Query: 121 tatctatctatctatctatctatctatctatctatctatctatctatctctatttattta 180
                                    |||||||||||||||||||||||||||||||||||
Sbjct: 200 -------------------------atctatctatctatctatctatctctatttattta 166

                                                                       
Query: 181 ttatgtgtacagatttgtggaagtcagagatgacttgtgggtgtcag-ttcct-tccgct 238
           |||||||||||||||||| |||||||||||||||||||||||||||| || || || |||
Sbjct: 165 ttatgtgtacagatttgttgaagtcagagatgacttgtgggtgtcagttttctctctgct 106

                                                                       
Query: 239 tgaggattctggacgtgaaactcaggtgattgggtttggcggcaagtgtctttacccact 298
           |||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct: 105 tgaggaatctggacgtgaaactcaggtgattgggtttagcagcaagtgcctttacccact 46

                                                        
Query: 299 gacccatctcaccggacctagaatattatttctgttttagctgta 343
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  gacccatctcaccggacctagaatattatttctgttttagctgta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)