BAC Information

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BAC

Clone NameMSMg01-101I17
Chromosome4 (Build37)
Map Location 92,781,864 - 92,782,334
singlet/doubletsinglet
Overlap genenone
Upstream gene1700011H22Rik, LOC68280, LOC620269
Downstream geneLOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I17.T7 (MSMg01no101_i17.b1)MSMg01-101I17.TJ (MSMg01no101_i17.g1)
ACCAG316929AG316930
length676781
length of high quality
(start - end)
241 (25 - 265)471 (130 - 600)
definitionCHROMAT_FILE: MSMg01no101_i17.b1 PHD_FILE: MSMg01no101_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:47 2005CHROMAT_FILE: MSMg01no101_i17.g1 PHD_FILE: MSMg01no101_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTTTTTTTACACAAAAACCAGAGAACCCAATCAAAATATGGGGTATAGA
ACTAAACTGAGAATTCACAACTGAGGAATCTCCAATGGCTGAGAAGCGCC
TAAAGAAATGCTCAAAGTCTTTAGTGATCAGAGAAATGCAAATCAAAACG
ACCCTGAGATTCCACCTTACACAATTCAGAATGGCTAGGATCAAAACTTC
ATTTGACAACATATGTTAGCAAGGATGTGGAGAAAGAGGAACACTCTTTC
ATCGTTTGTGGGATTGGGTACCGATAAAACCACTCTGGAAATCAGTCTGA
AGTTTCCTTATTATACCCGCCCACGGATCTAACTGAAGACCCATCTATAC
CACTCCTTGGAAAATTCTCAAAAGAAGACCCACCATGACACAGAAACACG
TGTTCCATGTCCATAGCAGCCTTATTTGTGATAGACAGAAAACAACCCAG
ATGTCCCCCAACAGAAGAATGGATACATAAAACGTGGTTCATTTACACAA
TGGAATACTACTCAGCTATTAAGAATGAGGACATCCTGAGTTTTGCAAGC
TAGTCAATGGAACTAGAAAGTATCACCCTGAGTGAGGTAACTCAGACACA
AAAGGACATGCTTGGTATGTACTCACTAATAAGTGGATATTAGAAGAAAA
AAGTACCGATACTTTAGATTCTGTCC
TAAATTTAAAATAATAACATTCATATCATCTCTTCTCTCCCCCCCTATAA
CAATTNTCTATGATATAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCACACTTAAATCTTGTAA
AATTTTTACTCTTTCTTTGAGTTCTGCTGAGATTTCTGTAGTTATTTGTA
CATTTGTCAAATTACATCCCAGGAAGATGTTTCAGCTTGAAACTTTATGA
GTAGTAAGTCACAGGGAATGTTTGGTCGAAAGGTTTCAAACACTAAGTGC
ATTTAAAACATATTAAATTATTTTTTAAATGTCTCATGCTTGAAATCTCC
ATTCCTGTGATACAGCAAATGTATTTTGTGTTTTGTTTTCAGATATGTTT
TGATGAGATGAATTTCAATTCTTATGAATTTTCTGAACAGATAGCCTAGT
AGTTGGAAGTTTACATTCTGTTTCTAAAATGCTAGGTACAGTCTCCAACA
CTGAAAAAAATAAGCAAAACATTTTGCTTATGTTGTAATACTCCCTTAAC
CTTATTATGAAGTGAAATTGCTTTTTCAGAAATTATTGAAAAATAATGAT
AAAAAGAAACATAAGGCTAAAAGAAACCAGAGCAAGCATTTGGAGTGTAT
CTTTGAAAGCAGCTTTTTGTTATATACCTTAAATTACAAAACACCTATAA
GTTTATGTCCTAACTACTCTCAAAATATAATCCAAATATTTTGCCTTAAA
TACTCCGGAACAATTTTCTTACTGTAATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i17.g1 MSMg01no101_i17.g1 CHROMAT_FILE:
MSMg01no101_i17.g1 PHD_FILE: MSMg01no101_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:48 2005
         (471 letters)



>mm_chr4_92781463_92782334
          Length = 872

 Score =  789 bits (408), Expect = 0.0
 Identities = 456/472 (96%), Gaps = 3/472 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcacacttaaatcttgtaaaatttttactctttctttgagttctgctgagatttctgt 60
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 872 tctcacacttaaatcttgtaaaacttttactctttctttgagttctactgagatttctgt 813

                                                                       
Query: 61  agttatttgtacatttgtcaaattacatcccaggaagatgtttcagcttgaaactttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 agttatttgtacatttgtcaaattacatcccaggaagatgtttcagcttgaaactttatg 753

                                                                       
Query: 121 agtagtaagtcacagggaatgtttggtcgaaaggtttcaaacactaagtgcatttaaaac 180
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 752 agtagtaaatcacagggaatgtctggtcgaaaggtttcaaacactaagtgcatttaaaac 693

                                                                       
Query: 181 atattaaattattttttaaatgtctcatgcttgaaatctccattcctgtgatacagcaaa 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 692 atattaaattattttttaaatgtctcatgcttgaaatttccattcctgtgatacagcaaa 633

                                                                       
Query: 241 tgtattttgtgttttgttttcagatatgttttg-atgagatgaatttcaattcttatgaa 299
           |||||||||||  || ||||||||||| ||||| || |||||| |||||| |||||||||
Sbjct: 632 tgtattttgtggcttattttcagatattttttgaat-agatgactttcaagtcttatgaa 574

                                                                       
Query: 300 ttttctgaacagatagcctagtagttggaagtttacattctgtttctaaaatgctaggta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttttctgaacagatagcctagtagttggaagtttacattctgtttctaaaatgctaggta 514

                                                                       
Query: 360 cagtctccaacactgaaaaaaataagcaaaacattttgcttatgttgtaatactccctta 419
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 513 cagtctccaacactgaaaaaaataagcaaagcattttgcttatgttgtaatactccctta 454

                                                               
Query: 420 accttattatgaagtgaaa-ttgctttttcagaaattattgaaaaataatga 470
            |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 453 gccttattatgaagtgaaaattgctttttcagaaattattgaaaaataatga 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space:   397382
Effective search space used:   397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)