BAC Information

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BAC

Clone NameMSMg01-102M23
Chromosome4 (Build37)
Map Location 143,709,940 - 143,710,187
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077
Downstream geneLOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102M23.T7 (MSMg01no102_m23.b1)MSMg01-102M23.TJ (MSMg01no102_m23.g1)
ACCAG317854AG317855
length725701
length of high quality
(start - end)
315 (89 - 403)248 (71 - 318)
definitionCHROMAT_FILE: MSMg01no102_m23.b1 PHD_FILE: MSMg01no102_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:31 2005CHROMAT_FILE: MSMg01no102_m23.g1 PHD_FILE: MSMg01no102_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:31 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCCCTCTATTTTNAATTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXX
XTCCGAAGATCCGCGGAATTCTTTGTTAAGTTCCGCACCCCATTTTTAAT
GGGGTTATTTGATTTTTTGGTGTCCACCTTCTTAAGTTCTTTATATATAT
TGTATAATAGTCCCCTATCTGAATTAGGATAGGTAAAGATCCTTTCCCCA
TCTGTTGGTGGCCTTTCTGTCTTATTGACAATGTCTTTTGCCTTACATTA
GCTTTGCAATTTCATGAGGTCCCATTTGTCGATTCTCGATCTTACAGCAC
AAGCCATTGCACTTCTATTCAGGAATTTTTCTCCTGTGCCCATATCTTCG
AAGCTTTTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTTTGGCTTTAT
GTATAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGA
ATGGATCAATTCGCATTCTTCTACATGTTACCCGCCAGTTGTGCCAGCCC
CATTTGTTGAAAATGCTGTCTTTTTTCCACTGGAAGGTTTTTGCTCCCTT
GTGACCATAGATTTGTGGATTCATTTCTGGCTCTTCCATTCTATTCCATT
GGCCTACGTGTTCTGCCGCTATACCCGTATTACGCATTTATTATCATCAT
TGCTCTATAGCATATCTCTACGTCAGGCCTCGTGACTCCTCCACAGGTTC
TTTTATCCTTGTTACTAGTCTTTCT
TGATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATATAAGACCAACATCACTACCTGGCGATGA
AATTGCAGAATGGCAGCCAATTAAATTCCTAGATAAACAGATTAATGCTG
AGTTAAGAATGCTGAAGAGGAGACAGGCATTGTGGCACTTGCCTATAATC
CCAGCACTCAGGGGGCAGAGACAGAGGCAGAGGCAGGCAGATTTGTGAGT
TTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATA
CAGAGAAACACTGACTCAAGGTATAAAAAAAAAAGAATGCTGAAGAGGAT
GGTCCATCCTTTCCTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCA
TGAGTATTTTGTTCCCAATTCTAAGAAGGGTAGAAGTGTATACACTTTGG
TCGTCCTTATTATTGAGTTTCATGTGTTTTGAAAATTGTATCTTGTATCT
TGGGTATTCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTGCATAT
CATGTGAGTTATTTTGTGATTGGTTTGCCTCACTCAGTATGATATCCTCC
AGATCCATCCATTTGTCTAGGAACTTCATACATTCTCTGTTTTTAATATC
TGATTAATACCCCCATTTGAGTCAATGGCCCCATTTTCGGCATCCCTTCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_m23.g1 MSMg01no102_m23.g1 CHROMAT_FILE:
MSMg01no102_m23.g1 PHD_FILE: MSMg01no102_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:31 2005
         (248 letters)



>mm_chr4_143709888_143710535
          Length = 648

 Score =  441 bits (228), Expect = e-128
 Identities = 243/248 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataagaccaacatcactacctggcgatgaaattgcagaatggcagccaattaaattcct 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 300 tataagaccaacatcactacctggtgatgaaattgcagaatggcagccaattaaattcct 241

                                                                       
Query: 61  agataaacagattaatgctgagttaagaatgctgaagaggagacaggcattgtggcactt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agataaacagatttatgctgagttaagaatgctgaagaggagacaggcattgtggcactt 181

                                                                       
Query: 121 gcctataatcccagcactcagggggcagagacagaggcagaggcaggcagatttgtgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gcctataatcccagcactcagggggcagagacagaggcagaggcaggcagatttgtgagt 121

                                                                       
Query: 181 ttgaggccagcctggtctacagagtgagttccaggacagccagggctatacagagaaaca 240
           | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 120 tcgaggccagcctggtgtacagagtaagttccaggacagccagggctatacagagaaaca 61

                   
Query: 241 ctgactca 248
           ||||||||
Sbjct: 60  ctgactca 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)