Query= MSMg01no103_o14.b1 MSMg01no103_o14.b1 CHROMAT_FILE:
MSMg01no103_o14.b1 PHD_FILE: MSMg01no103_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:58 2005
(529 letters)
>mm_chr4_24597506_24598434
Length = 929
Score = 977 bits (505), Expect = 0.0
Identities = 523/529 (98%)
Strand = Plus / Minus
Query: 1 aattttgttttctaaattactacatggaaagtgggaaagcctgctattctgtccactctc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 729 aattttgttttctaaattactacatggaaaatgggaaagcctgctattctgtccactctc 670
Query: 61 tcttttactttgtgaactgcttgcctttatcctgccattgcactgtacagtttggccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcttttactttgtgaactgcttgcctttatcctgccattgcactgtacagtttggccaag 610
Query: 121 aaaacaacagtctaagttttctgtaaagctacttagttaagatgttaaaagctaacctga 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 609 aaaacaacagtctaagttttctgtaaagctacttagttaagatattaaaagctaacctga 550
Query: 181 aagctgagccagcggataccctctcgccttacagcagtgctgagcacaattcaaagcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aagctgagccagcggataccctctcgccttacagcagtgctgagcacaattcaaagcagt 490
Query: 241 gcactccatattggtagaatcctgaatgttcaaatcctaaagaaacgtaaaatccttcag 300
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gcactccagagaggtagaatcctgaatgttcaaatcctaaagaaacgtaaaatccttcag 430
Query: 301 agcctgtaccacacacacgtgcgtgcatatatgcacttgtgcacatgcaaataatacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agcctgtaccacacacacgtgcgtgcatatatgcacttgtgcacatgcaaataatacaca 370
Query: 361 cggattttatagctaaaccttttccctttgttttgtagctttgacttaaaacctatcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cggattttatagctaaaccttttccctttgttttgtagctttgacttaaaacctatcagt 310
Query: 421 ttcatgatgagtccctagttgattgcaaacttaagaaaattgaagctagaggcttgttta 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 309 ttcatgatgagtccctagttgattgcaaacttaagaaaatcgaagctagaggcttgttta 250
Query: 481 ttcggttccattcatcgctatgttttaaaggatgttaatatctacagtt 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttcggttccattcatcgctatgttttaaaggatgttaatatctacagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_o14.g1 MSMg01no103_o14.g1 CHROMAT_FILE:
MSMg01no103_o14.g1 PHD_FILE: MSMg01no103_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:58 2005
(291 letters)
>mm_chr4_24435917_24436607
Length = 691
Score = 474 bits (245), Expect = e-138
Identities = 284/311 (91%), Gaps = 24/311 (7%)
Strand = Plus / Plus
Query: 1 cacattaaggagggcaatccactttactgagtctactaatttaaatgttaacttcagaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 185 cacattaaggagggcaatccactttactgagtctactaatttaaatgttaacttgagaaa 244
Query: 61 atttaaaagtatgtatccagtataacatttaatctgctatctggggatttgtgcctgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atttaaaagtatgtatccagtataacatttaatctgctatctggggatttgtgcctgatt 304
Query: 121 aagttgacacaacaaacacatattttgtattatttatgtatttgtgtgtgtgtgt----- 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagttgacacaacaaacacatattttgtattatttatgtatttgtgtgtgtgtgtgtgtg 364
Query: 176 -----------acagatagtagaatgaggaagaatcctgaagtaatgatttccctaatac 224
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgtgtgtgtgtacagatagtagaatgaggaagaatcctgaagtaatgatttccctaatac 424
Query: 225 gttatgaaatgaaatgatc----tttttgtaaaagattgtagtaaatcatcttttatgta 280
||| ||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 425 gttgtgaaatgaaatgagcagaat----gtaaaagattgtagtaaatcatcttttatgta 480
Query: 281 ggaaaccagag 291
|||||||||||
Sbjct: 481 ggaaaccagag 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
