BAC Information

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BAC

Clone NameMSMg01-104A20
Chromosome4 (Build37)
Map Location 25,602,903 - 25,603,307
singlet/doubletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104A20.T7 (MSMg01no104_a20.b1)MSMg01-104A20.TJ (MSMg01no104_a20.g1)
ACCAG318763AG318764
length714714
length of high quality
(start - end)
494 (68 - 561)405 (71 - 475)
definitionCHROMAT_FILE: MSMg01no104_a20.b1 PHD_FILE: MSMg01no104_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:10 2005CHROMAT_FILE: MSMg01no104_a20.g1 PHD_FILE: MSMg01no104_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGTTTTTTCCTTGTTTGTTTTTTGTTTTTTGCCTAATATCCATCTAT
TAGTGTGTACATACCATGCATGTCCTTTTGGGTCTGAGTTTCCTCACTCA
GGATGATATTTTCTAGTCCCATCCATTTGCCTGCAAAATTCAGGATGTTC
TCACTCTTAATAGCTGAGTAGTATTCCACTGTGTAAATGAACCACATTTT
CTGTATCCATTCTTCTGTTGTGGAACATCTAGGTTGTTTCCAACTTCTAG
CTATCACAAATAAGTCTGCTCTGAACATAGTGGAACTCATGCCCCTGTGG
GATGGTGGGGCATCTTTTGGGTATATTACTAAGAGTGGTATAGCTGGGTC
TTCAGGTAGATCTATTTCCAATTTCTGAGAAACCTCCAGATTGATTTCCA
GAATGGTTGTATCAGTTTGCAATCACACCAGCAATGGAGGGGTGTTCTTC
TTACTCCACATCCTCTCCAACATTCATTGTCAAATGAGGTTCTGATCTTA
GCCATTCTGATTGATGTAAGGTGGAATTTCAGGGTCATTTTGATTTGCAT
TTCTCTGATCACTAGGAACTTTTTAAAAATTTCTTTAGGTGTTTCTTCAC
CATTCGAGATTCTTCAGCTGTGATTTCTTAGTCCAGTTTAATATCCCCTT
TTTTTGATTGGGTA
ATACAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGCTCTGCCTGTGCCATGCCTGTCTGGA
TACTGCCATGCTCCCACCTCGATGATAATGGACTGAACCTCTGAACCTGT
AAGCCAACACCAATTAAATGTTTTTTTATATAAGACTTGCCTTGGTCATG
GTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACATATATGCTAAATAA
ATTTTATTGAGGTGTAATAAAAGAAGAAATCTGCTTGCTAATTTGATAAG
AACATGATGAGTTTCTGTTGTTTCATTTATTAAGATTCATAATAGGCAGC
TAACTAGAAAAGGATAAATTAATGTCATATACAAAATCTATCATCAAATA
CTCCACATTCTAAGCATGGTATTATTTATAACAAAAAATTCTCAGAAAAT
AATAATTGGTTTATTCTCTTTCACATGGAAAGAATATTATATAAATATTT
TATATTTTTTCACATATAAAGGATATTCCCTTTTTGAATATTATAATTAT
AGTGAACAAATTGCTTGTAGGCTATAACCCTAATATTTATATACTCCAAA
GAAATGTCTCTTCATTTACATCTTAGCACCTTCTCTTTTCTTTCCATATT
ACTATAAAATAGCATTGCTTCCTGGTGTAAGCCTAACTGCGCTAATTTCG
CCACAAATATTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_a20.g1 MSMg01no104_a20.g1 CHROMAT_FILE:
MSMg01no104_a20.g1 PHD_FILE: MSMg01no104_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:10 2005
         (405 letters)



>mm_chr4_25602537_25603341
          Length = 805

 Score =  768 bits (397), Expect = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagctctgcctgtgccatgcctgtctggatactgccatgctcccacctcgatgataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 771 tcagctctgcctgtgccatgcctgtctggatactgccatgctcccaccttgatgataatg 712

                                                                       
Query: 61  gactgaacctctgaacctgtaagccaacaccaattaaatgtttttttatataagacttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gactgaacctctgaacctgtaagccaacaccaattaaatgtttttttatataagacttgc 652

                                                                       
Query: 121 cttggtcatggtgtctgttcacagcagtaaaaccctaactaagacatatatgctaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cttggtcatggtgtctgttcacagcagtaaaaccctaactaagacatatatgctaaataa 592

                                                                       
Query: 181 attttattgaggtgtaataaaagaagaaatctgcttgctaatttgataagaacatgatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 attttattgaggtgtaataaaagaagaaatctgcttgctaatttgataagaacatgatga 532

                                                                       
Query: 241 gtttctgttgtttcatttattaagattcataataggcagctaactagaaaaggataaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtttctgttgtttcatttattaagattcataataggcagctaactagaaaaggataaatt 472

                                                                       
Query: 301 aatgtcatatacaaaatctatcatcaaatactccacattctaagcatggtattatttata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 471 aatgtcatatacaaaatctatcatcaaatactccacattctaagcatgggattatttata 412

                                                        
Query: 361 acaaaaaattctcagaaaataataattggtttattctctttcaca 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acaaaaaattctcagaaaataataattggtttattctctttcaca 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)