Query= MSMg01no104_m23.b1 MSMg01no104_m23.b1 CHROMAT_FILE:
MSMg01no104_m23.b1 PHD_FILE: MSMg01no104_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:12 2005
(319 letters)
>mm_chr4_143788249_143788967
Length = 719
Score = 565 bits (292), Expect = e-165
Identities = 312/320 (97%), Gaps = 4/320 (1%)
Strand = Plus / Plus
Query: 1 gaattctttagctttttctca--gggaactccaacaatgaagataatgaaaatagtctaa 58
||||||||||||||| | || |||||||||||||||||||||||||||||||||| |
Sbjct: 201 gaattctttagcttt--cacaaagggaactccaacaatgaagataatgaaaatagtccca 258
Query: 59 gacaacatttgttttggacacaagcaaccaatcagaaggcaagttttggttttaagttgg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gacaacatttgttttggacacaagcaaccaatcagaaggcaagttttggttttaagttgg 318
Query: 119 aacaaagagggagagcagtgagggtttaatgagcctggttctcagttttcatataaattg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aacaaagagggagagcagtgagggtttaatgagcctggttctcagttttcatataaattg 378
Query: 179 cactgtgttaaaacctaagatactatgagtgaggtttttgtaaaatattactactttcca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cactgtgttaaaacctaagatactatgagtgaggtttttgtaaaatattactactttcca 438
Query: 239 tagagagatgggtgcagaggatttatttttacagaaataatgtgaaatactgtaaaaatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tagagagatgggtgcagaggatttatttttacagaaataatgtgaaatactgtaaaaatt 498
Query: 299 aggctgagagtactttatac 318
||| ||||||||||||||||
Sbjct: 499 aggttgagagtactttatac 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_m23.g1 MSMg01no104_m23.g1 CHROMAT_FILE:
MSMg01no104_m23.g1 PHD_FILE: MSMg01no104_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:12 2005
(591 letters)
>mm_chr4_143572463_143573453
Length = 991
Score = 847 bits (438), Expect = 0.0
Identities = 530/592 (89%), Gaps = 50/592 (8%)
Strand = Plus / Plus
Query: 2 agacttggagtgacagaggaatttgagccaacatatgagtccttggaactgaaccccagt 61
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 202 agacttggagtgacagaggaatttgagccaacatatgagtacttggaattgaaccccagt 261
Query: 62 cctctagaagaatatccagtgcctttagatgctgagacacctctccattccttcatttac 121
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 262 cctctagaagaatatccagtgcatttagatgctaagacacctctccattccttcatttac 321
Query: 122 aaaatttttataatcttttattttctatgatgatacatgcatgataaatgtaagcacttc 181
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 aaaatttttgtaatcttttattttctacaatgatacatgcatgataaatgtaagcacttc 381
Query: 182 cccattgaactatatcccaagccctttcataatttcttgagtaatatatatatatatatg 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cccattgaactatatcccaagccctttcataatttcttgagtaatatatatatat----- 436
Query: 242 tatgtatatatatatacatatatatatatatattcattcatgcattcatgtttatcttac 301
||||| |||||||||||||||| ||||
Sbjct: 437 ---------------------------------tcattaatgcattcatgtttatgttac 463
Query: 302 tctatagtgcagggtgctcaggggttcttggagtagacaggctagtggtaaacataaggg 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctataatgcagggtgctcaggggttcttggagtagacaggctagtggtaaacataaggg 523
Query: 362 aacctgcctgcctgccttagagtttggttataggcatgagcctgcagtaataggtttttt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aacctgcctgcctgccttagagtttggttataggcatgagcctgcagtaataggtttttt 583
Query: 422 ct--gagtagggattggacatgcatccagaactagcctctaactcatgctgtgaacactg 479
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctatgagtagggattggacatgcatccagaactagcctctaactcatgctgtgaacactg 643
Query: 480 ctgcttctaataagtgacactccatccttaacatcatagtgtatcaccaagcctggtgat 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctgcttctaataagtgacactccatccttaacatcatagtgtatcaccaagcctggt--- 700
Query: 540 actgggtccacaaaccaggtttgaaacattcacattggataagacaagcatc 591
||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 701 -------ccataaaccaggtctgaaacattcacattggataagacaagcatc 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
