BAC Information

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BAC

Clone NameMSMg01-104P05
Chromosome4 (Build37)
Map Location 122,724,158 - 122,724,600
singlet/doubletsinglet
Overlap geneTrit1
Upstream geneLOC666937, LOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1
Downstream geneBmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104P05.T7 (MSMg01no104_p05.b1)MSMg01-104P05.TJ (MSMg01no104_p05.g1)
ACCAG319433AG319434
length694707
length of high quality
(start - end)
446 (48 - 493)35 (77 - 111)
definitionCHROMAT_FILE: MSMg01no104_p05.b1 PHD_FILE: MSMg01no104_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:23 2005CHROMAT_FILE: MSMg01no104_p05.g1 PHD_FILE: MSMg01no104_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTCATCGCCAGCACGCAGAGGAAGGCGGTGGTCCTCTTGGAG
GCCCTCTCAGGTTCCCTAACCCATGCATCCTCTGGCTCCATGCTGACCAG
GCAGGTAAATGCTTCGGTCCAGAGTCTGTCTGAGACAAAACGGAGAATAC
TAGGGTTTTATGTGTCAAGTGCTTCGAACCACTGGTGGCTGACACTGAGC
ACTAGTGTGAGCTCCCAAGTTTACTGTGTCAGCCACCACACCTTGCCTTA
GACCCCATGCAGTGCTTCCTTATTGATTCAGGAAAGAAGGGAAGGAGAAT
ACTGGTTCTCAGATAACCAGCGTAGGGTAGGATGAAATGTGCAGACTGAA
GAGAGACTGCTGCTGAGAAGGTTGAAAGGACAGAGGGAGGGAGGTTCCTG
TCGGACCTCATGGTTGGCTGCTGGTAGGATCTCTCATTAGGCCTGAGAAA
TGTGTGTGGCAACTGGCTAGCTAACCTGATAGCATTTGTTGCTAATGTAT
CCTGATGCCCTGTGCTGGCGTATGTTTCACCCATAAAGGCATTCCTTGAG
CACCCAGTGTTGAATGGCCCAGTCTTGAAGACGTCTCTTTACCTTACGAT
GCTTGCTCACTGTCTCCTAACTTTGTCAGCCCCTTTTTTTATAC
CCGATGAAGTGGGAGGCCTGGCGGCCGCCTTTTCAAAACATTAGGTGACC
TATAGATTTTCCGCGGAATTCTGTTGGCAAGCGCTTTCTAGGAGGAGTGT
CCTGCCAGACCTAGGGATGTGGTACTTCCAGCTAAAGGGGTCCAGTGTTC
TGGGAGCTGTGTCTCCTCTACCCCAGTGCTGCAGTCTGAGGCTTCGCCTG
GTCCTTTTGTTGTTCAGTTGGTTTTTTAAATCTCCTGGCAACACAATCTA
TAAATAAAGCTTCCTGCTGCCAGTCTTCTCTTCATTTCTGGTGGCCATCC
AGTAATACTGTCTGTCTGTTTCTAGATCCTGTCCCTCCGACTTCTGGCCT
GCTGTTCTACGCCCCATACGCTTTTGTCTAGTACCGAGATGTTCATCTGT
GTTCTCAGTAATAAACTTTGCACTCGTTCTGCACTGTCTTGCTCTGTTCG
TATTTACTACCGCATGCTCCTGTTGTTCGTCCTTCCCTTTCCTGTACCCT
ATCCTTCCAGATCTGCTATGTCTATATTTTCTTGTATCTTGCGTAATCTT
GCTTCCTATTTGCAGTCCTTTTTGATCACCCCCGTGTTCATCCCTACTTC
TTGTCCATCATTATCCCCCCTCTATCTCACCCTTGCGCCTTGTTTTCTTT
CCCTCTTTCCGTTCTTTTTTTTCTTGTACCCCCCCATCCCCTCTCTTTTC
GTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_p05.b1 MSMg01no104_p05.b1 CHROMAT_FILE:
MSMg01no104_p05.b1 PHD_FILE: MSMg01no104_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:23 2005
         (446 letters)



>mm_chr4_122723954_122724800
          Length = 847

 Score =  818 bits (423), Expect = 0.0
 Identities = 438/443 (98%), Gaps = 1/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcatcgccagcacgcagaggaaggcggtggtcctcttggaggccctctcagg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcatcgtcagcacgcagaggaaggcggtggtcctcttggaggccctctcagg 264

                                                                       
Query: 65  ttccctaacccatgcatcctctggctccatgctgaccaggcaggtaaatgcttcggtcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccctaacccatgcatcctctggctccatgctgaccaggcaggtaaatgcttcggtcca 324

                                                                       
Query: 125 gagtctgtctgagacaaaacggagaatactagggttttatgtgtcaagtgcttcgaacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtctgtctgagacaaaacggagaatactagggttttatgtgtcaagtgcttcgaacca 384

                                                                       
Query: 185 ctggtggctgacactgagcactagtgtgagctcccaagtttactgtgtcagccaccacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctggtggctgacactgagcactagtgtgagctcccaagtttactgtgtcagccaccacac 444

                                                                       
Query: 245 cttgccttagaccccatgcagtgcttccttattgattcaggaaagaagggaaggagaata 304
           |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 cttgccttagaccccatgtagtgcttccttagtgattcaggaaagaagggaaggagaata 504

                                                                       
Query: 305 ctggttctcagataaccagcgtagggtaggatgaaatgtgcagactgaagagagactgct 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 ctggttctcagataaccagcgtagggtaggatgaaatgtgcagactaaagagagactgct 564

                                                                       
Query: 365 gctgagaaggttgaaaggacagagggagggaggtt-cctgtcggacctcatggttggctg 423
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 gctgagaaggttgaaaggacagagggagggaggtttcctgtcggacctcatggttggctg 624

                                  
Query: 424 ctggtaggatctctcattaggcc 446
           |||||||||||||||||||||||
Sbjct: 625 ctggtaggatctctcattaggcc 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space:   364932
Effective search space used:   364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)