Query= MSMg01no105_f24.b1 MSMg01no105_f24.b1 CHROMAT_FILE:
MSMg01no105_f24.b1 PHD_FILE: MSMg01no105_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:59 2005
(605 letters)
>mm_chr4_19113031_19114035
Length = 1005
Score = 1102 bits (570), Expect = 0.0
Identities = 594/602 (98%), Gaps = 2/602 (0%)
Strand = Plus / Minus
Query: 5 gaattcattcttctgtcacgggatatctag-ttttttttccccaatgtctggctattatg 63
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 995 gaattcattcttctgtcaagggatatctagtttttttttccccaatgtctggctattatg 936
Query: 64 aataaagcagcaatgaacattgttgagcaagtgtccttatgatagcatgacccatccttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 aataaagcagcaatgaacattgttgagcaagtgtccttatgatagcatgacccatccttt 876
Query: 124 ggctatatgactaagattgatatagctagaacttgaattagattgactccctcttctcat 183
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ggctatatgact-atattgatatagctagaacttgaattagattgactccctcttctcat 817
Query: 184 gcaacatcacagagtatacccctttactgcttatgcttataaaatatgcataactctata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gcaacatcacagagtatacccctttactgcttatgcttataaaatatgcataactctata 757
Query: 244 ttcaaatgcatttaatttaattggtttcccaaatatcccttattttatttcatatatttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ttcaaatgcatttaatttaattggtttcccaaatatcccttattttatttcatatatttc 697
Query: 304 atccatttgcgtgtcaacgtgtagtctaataatttgagccaatacccagtaccgcacaca 363
|||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 696 atccatttgcatgtcaacctgtagtctaataatttgagccaatgcccagtaccgcacaca 637
Query: 364 gtgctagttttcagttggcatgcatgcttatggtcatagcagttactcaaatataaaact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtgctagttttcagttggcatgcatgcttatggtcatagcagttactcaaatataaaact 577
Query: 424 gaggcaaatagccttctttgtttctcctgagagctgttctgtatctcaggccttccatat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaggcaaatagccttctttgtttctcctgagagctgttctgtatctcaggccttccatat 517
Query: 484 cctaacatctccagggttaacactaaacttttggctttaattatgtttcactgttttgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cctaacatctccagggttaacactaaacttttggctttaattatgtttcactgttttgct 457
Query: 544 ggagggtgggtggatggtctttagaatcctgttcagatgccaaggttagtattcatcttg 603
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggagggtaggtggatggtctttagaatcctgttcagatgccaaggttagtattcatcttg 397
Query: 604 at 605
||
Sbjct: 396 at 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_f24.g1 MSMg01no105_f24.g1 CHROMAT_FILE:
MSMg01no105_f24.g1 PHD_FILE: MSMg01no105_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:59 2005
(497 letters)
>mm_chr4_19024934_19025829
Length = 896
Score = 930 bits (481), Expect = 0.0
Identities = 490/493 (99%), Gaps = 1/493 (0%)
Strand = Plus / Plus
Query: 1 agagaagttggtttgtcacgagacataatctcctggaataaaattgttattatcgaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 agagaagttggtttgtcacgagacataatctcctggaataaaattgttattat-gaaact 259
Query: 61 cagcagcactatgtaatatgaacacccaccaaccataaaaagcacaaatatcaaatatat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagcagcactatgtaatataaacacccaccaaccataaaaagcacaaatatcaaatatat 319
Query: 121 ccacagataaagttcactttcaaaaaaaccgattttaccttttgtcaacctggtgagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccacagataaagttcactttcaaaaaaaccgattttaccttttgtcaacctggtgagaaa 379
Query: 181 ctttaggcaacactgtcttttcacgcaggaatatttgaggatattgcttgatgaaagcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttaggcaacactgtcttttcacgcaggaatatttgaggatattgcttgatgaaagcat 439
Query: 241 catgagcttccgaacgaagggaagaatgctggctaaagcaagatagggagaagagctgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgagcttccgaacgaagggaagaatgctggctaaagcaagatagggagaagagctgta 499
Query: 301 agggtcacacaccatttttttacaagagttttaatttattatattaattttgtattattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agggtcacacaccatttttttacaagagttttaatttattatattaattttgtattattt 559
Query: 361 ttattgccaagctttttatttttgcagttgaataaagctgttatttaattcagcatagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttattgccaagctttttatttttgcagttgaataaagctgttatttaattcagcatagta 619
Query: 421 aaatttctccaaaatgattcccaaatcttttgcctacacatgcatatacatatatacata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatttctccaaaatgattcccaaatcttttgcctacacatgcatatacatatatacata 679
Query: 481 tatacagacatac 493
|| ||||||||||
Sbjct: 680 tacacagacatac 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
