BAC Information

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BAC

Clone NameMSMg01-105G20
Chromosome4 (Build37)
Map Location 113,865,282 - 113,865,596
singlet/doubletsinglet
Overlap geneA630098G03Rik
Upstream geneLOC230622, LOC100040607, LOC242627, LOC100040625
Downstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105G20.T7 (MSMg01no105_g20.b1)MSMg01-105G20.TJ (MSMg01no105_g20.g1)
ACCAG319785AG319786
length703700
length of high quality
(start - end)
558 (45 - 602)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no105_g20.b1 PHD_FILE: MSMg01no105_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:03 2005CHROMAT_FILE: MSMg01no105_g20.g1 PHD_FILE: MSMg01no105_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAATTCTTATCAGCACCACAGCAGCCTTATAGTAGGATGTTAAAA
CTTTGAGGTGAAGAAGGATAATTTTACATTAATGTTTATTTTTGCCAAAA
AATAGCTGTGGACACATTTAATAAAATTAACTAGAATATGTAACTAATAT
TTGATTACCACCAATTACAATTGATAACAATAGATTACAGAAGTTTCTTC
TACTCTCTGTTAAAGCCTTTTTGGTTCTCAGCAGTTAATTGGAATCTCAC
TTGATAGCACCTAACAAGGACTTAGGTTCTCCTGTGGTGAGTTTAAGGTG
AGGTCTTAGCCAATTAACATATCCTGTAAGCTTTTGGAAATAAAATTTTG
AAGTAAATTTGTACCAATTTTCCAGTATAACTGAAACCCTAATTATAAAA
AAAGATTTTGCCTCTGAATCTTATGAAGCAACAACTATTCCCCAGAACTT
TAAACTTCCCTTTAGAGACATTAGCTAATAAAATACTTTTCACATAGGAA
ACAATATATACTGAAAGATTTAAACCTTTTGCTTCTTGTATTCAAGCCGA
CAATAAAAATTTCTTACATATTGTTAAGCTATGTTAGCCATACCTTAGGG
CAAAAACCTTTAATGGTCACCAGTTCACTAAAAGTAAACTCTTTTACAAT
GGA
ACGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGCCCAAGGGGGTGAAGATGAAAGT
GGATCAACCCCATCTCATTTTTCGGTTAATAAAATTACAGAGAAAAGGAA
CTAGTGAGCAGTTTTTATTTACATCTTCAGATGGAAATGAAGTCATTACT
CCCTTGTCAAAGAAATACCTCTTTCTGGAAAATAGAGGGCATCCTAGAAA
CTATGGCTAGATGCAATGTAGAGATCAAAGGACTTTGGGAAATCCAACCC
AATAGGTACAACATGTTATAACTTCTGCATATGTGGCTTGGGGAACATAG
TGGAAGAAAGGGTAGAAAAATTGTAAGAGCCTGAATACAGGAGGTCTGCA
CTAAGACAGTCTGACCTAGAAATGTCTGAATAACCAAGTCTGAAACAATG
GAAACATTAACAGACATATTAGCATAGAAGGAAAAAATTTTTGCAGGATC
TTACATGAGACAAAGGACTACAAGTAACTAATGATTGCTGGCAGAAGGAT
CCACTTATTGGTTGTCCAATGCAGAATGGTCAGCCGTTGAACCATACACA
TACACACAACACAAGCTCAATAGATTATATTTATATGTGTGTACCTACAT
ATATATGATTGTATGATGCCTGATTGCATGATTGTATTACAATATAATTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_g20.g1 MSMg01no105_g20.g1 CHROMAT_FILE:
MSMg01no105_g20.g1 PHD_FILE: MSMg01no105_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:03 2005
         (472 letters)



>mm_chr4_113864725_113865596
          Length = 872

 Score =  540 bits (279), Expect = e-157
 Identities = 306/315 (97%)
 Strand = Plus / Minus

                                                                       
Query: 158 aatagagggcatcctagaaactatggctagatgcaatgtagagatcaaaggactttggga 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aatagagggcatcctagaaactatggctagatgcaatgtagagatcaaaggactttggga 813

                                                                       
Query: 218 aatccaacccaataggtacaacatgttataacttctgcatatgtggcttggggaacatag 277
           |||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| ||
Sbjct: 812 aatccaacccaataggtagaacatgttataacttctgcatatgtgttttggggaacacag 753

                                                                       
Query: 278 tggaagaaagggtagaaaaattgtaagagcctgaatacaggaggtctgcactaagacagt 337
           |||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||| |
Sbjct: 752 tggaagaaagggtagaaacattgtaagagtctgaacacaggaggtctgcactaagacatt 693

                                                                       
Query: 338 ctgacctagaaatgtctgaataaccaagtctgaaacaatggaaacattaacagacatatt 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctgacctagaaatgtctgaataaccaagtctgaaacaatggaaacattaacagacatatt 633

                                                                       
Query: 398 agcatagaaggaaaaaatttttgcaggatcttacatgagacaaaggactacaagtaacta 457
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agcatagaaggagaaaatttttgcaggatcttacatgagacaaaggactacaagtaacta 573

                          
Query: 458 atgattgctggcaga 472
           |||||||||||||||
Sbjct: 572 atgattgctggcaga 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)