TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCATTGGAATTTCATTACTCAACATGATTATATACTGACAGCAAA
CTCATTATTGGCAGGATTGATTATTATTATGCAAACATTTCCATTATTCA
TTTATTGAAAACTTGGGCAGTCTTCCCAGACTAGAATTGAATCCTCCACT
ACTTTTCACTTCATTACCTTTTTAGTTGAATATATTTAACTTTCCAAGGT
GGTATTTGGAGTCATGTCATTCTTTACCATGAAATTCATTCTGGAAACGG
ACATTTCGTCAAGGAAAAGAAACAGCAGCATTATGATGACAGAATGCAGG
ACAGCACTGTCAGTTCTGCTCCAACAACTCAGGTTATAGTCATTTGCTTG
TTTGCTCATAGACCTTTATATGAACTGACCTGGTTCATATTTCATTTCTT
AAAGTAGACTCCAAAAGCAGCAATTCGTAAAATAGATTAGCTGCTAACAT
GTGAGTCATAAGGCCATGCTATAAACATTTGTTGAGTGAATGAATGGCTG
AGGGACATGGACACTAGCTTGTCTTCTCTAGTGGCTTAAACTTGAGATGA
CATTGACATTATTGCTCGTTCCTTAAAGGAAATAGTCTTCTGCCTTCAAG
CAAACATCAATAAATACCATATTTCAACCAAAGCCCATTAAACTCTCC

TACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTTTAGAATCCAGAGAATCAA
ATAACCCTATTAAGATATGGTGTCCAGAAGTAAACAAAGAATTCTCAATA
AAGAAACTATCCATTTAAAAAAAAATGGCATGGCCCTATTGGAGTAGGTA
TGTCACTGTGGGTGTGGCTATAAGACCCTCCTCCTAACTGCCTGGAAGCA
AGTATTCTAATAGTAGCCTTCAGATGAAGATACGTAACCCTCAGCAATTC
CTGTACCATCCTTACCTGTATGTTCCTGCCTTGGTGTTAATGGACTGAAC
TTCTGAACCTGTAAGCCAGCCTCAATTAAATGCTGTCCTTAAAAGAGTTG
CCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACACTAAGACAGCAACCC
ACCCAAAAAAAAAAAAAAAAAAAAAAACGTTGGCCAAAACTGTGTACTGC
CTACAATATGCTCAGGACCAAAGACTGAGCAGAGATTGAGGGAATGCCTA
ACAGATGACTTCCCCAAATTGGGACGTATCCCATAGACAACCCCTGAAAA
TATGAATGGTTTTCTATCTTACTTTGCAAAGTGTAAATTACCATAACTGC
CTCTTAAAGACTCCTACCCGTACCACCCAATGTTAAGAAAAGCT

Query= MSMg01no105_i16.b1 MSMg01no105_i16.b1 CHROMAT_FILE:
MSMg01no105_i16.b1 PHD_FILE: MSMg01no105_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:12 2005
         (552 letters)



>mm_chr4_51488060_51489012
          Length = 953

 Score = 1029 bits (532), Expect = 0.0
 Identities = 544/548 (99%), Gaps = 1/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcattggaatttcattactcaacatgattatatactgacagcaaactcattattgg 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattggaatttaattactcaacatgattatatactgacagcaaactcattattgg 265

                                                                       
Query: 66  caggattgattattattatgcaaacatttccattattcatttattgaaaacttgggcagt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caggattgattattattatgcaaacatttccattattcatttattgaaaacttgggcagt 325

                                                                       
Query: 126 cttcccagactagaattgaatcctccactacttttcacttcattacctttttagttgaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttcccagactagaattgaatcctccactacttttcacttcattacctttttagttgaat 385

                                                                       
Query: 186 atatttaactttccaaggtggt-atttggagtcatgtcattctttaccatgaaattcatt 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 386 atatttaactttccaaggtggttatttggagtcatgtcattctttaccatgaaattcatt 445

                                                                       
Query: 245 ctggaaacggacatttcgtcaaggaaaagaaacagcagcattatgatgacagaatgcagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctggaaacggacatttcgtcaaggaaaagaaacagcagcattatgatgacagaatgcagg 505

                                                                       
Query: 305 acagcactgtcagttctgctccaacaactcaggttatagtcatttgcttgtttgctcata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acagcactgtcagttctgctccaacaactcaggttatagtcatttgcttgtttgctcata 565

                                                                       
Query: 365 gacctttatatgaactgacctggttcatatttcatttcttaaagtagactccaaaagcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gacctttatatgaactgacctggttcatatttcatttcttaaagtagactccaaaagcag 625

                                                                       
Query: 425 caattcgtaaaatagattagctgctaacatgtgagtcataaggccatgctataaacattt 484
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 626 caattcgtataatagattagctgctaacatgtgagtcataaggtcatgctataaacattt 685

                                                                       
Query: 485 gttgagtgaatgaatggctgagggacatggacactagcttgtcttctctagtggcttaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gttgagtgaatgaatggctgagggacatggacactagcttgtcttctctagtggcttaaa 745

                   
Query: 545 cttgagat 552
           ||||||||
Sbjct: 746 cttgagat 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space:   511106
Effective search space used:   511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)