Query= MSMg01no106_l10.b1 MSMg01no106_l10.b1 CHROMAT_FILE:
MSMg01no106_l10.b1 PHD_FILE: MSMg01no106_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:33 2005
(276 letters)
>mm_chr4_33502116_33502791
Length = 676
Score = 518 bits (268), Expect = e-151
Identities = 274/276 (99%)
Strand = Plus / Minus
Query: 1 gcatgcttaaatgtccatgcaatttatttatttatatataacataaaaatgaggatactc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gcatgcttaaatgtccatgcaatttatttatttatatataacataaaaatgaggatacta 467
Query: 61 ctgaaaaaagagaaattttatatctgaggaatttgcagtgttacataagtaaaaacacat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgaaaaaagagaaattttatatctgaggaatttgcagtgttacataagtaaaaacacat 407
Query: 121 gtaacgtttatataacttctcattttttaagcaaattaatgaaaaaaatgtactttttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtaacgtttatataacttctcattttttaagcaaattaatgaaaaaaatgtactttttag 347
Query: 181 aaatgtgtagtctagacttcttttgatgagtgaaacatgattctgggatctgaaatagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaatgtgtagtctagacttcttttgatgagtgaaacatgattctgggatctgaaatagat 287
Query: 241 tctgtgtatcaatacgagtataaagtatctttcaac 276
||||||||||||||||||||||||||||||||||||
Sbjct: 286 tctgtgtatcaatacgagtataaagtatctttcaac 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no106_l10.g1 MSMg01no106_l10.g1 CHROMAT_FILE:
MSMg01no106_l10.g1 PHD_FILE: MSMg01no106_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:33 2005
(352 letters)
>mm_chr4_33372212_33372963
Length = 752
Score = 567 bits (293), Expect = e-166
Identities = 341/365 (93%), Gaps = 15/365 (4%)
Strand = Plus / Plus
Query: 1 tgagtgctgggactagctccatgtaccactgcacccagttcattctgtgctagggatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtgctgggactagctccatgtaccactgcacccagttcattctgtgctagggatcaa 260
Query: 61 acccagggcctcacgagcacctgccaagcagctctctaccaacagggtctcggagacagc 120
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 acccagggcctcacgagcgcctgccaagcagctctctaccagcagggtctcggagacagc 320
Query: 121 ctcagcagatacacagcttatacaactcgaaatacatgtcctccttctgaaagacggaac 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 321 ctcagcagatacacagcttatacaactcgaaatacacgtcctccttctgaaagacagaac 380
Query: 181 agaaccttaagccacccagttcctcattcctggacgctgcccgtataaagcccgttgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaccttaagccacccagttcctcattcctggacgctgcccgtataaagcccgttgcct 440
Query: 241 gggctgacctgggcgaggttctcttcttatttcactgaggatttggagcagcagaaagga 300
|||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gggctgacctgggcaaggtcctcttcttatttcactgaggacttggagcagcagaaagga 500
Query: 301 aaattacagttt---------atatacagtttaaaaaaaa----gggggaccattccccc 347
|||||||||||| |||||||||| |||||||| ||| || ||||||||
Sbjct: 501 aaattacagtttcatttcagaatatacagttaaaaaaaaaaaaaggg--acaattccccc 558
Query: 348 aagta 352
|||||
Sbjct: 559 aagta 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space: 254849
Effective search space used: 254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
