Query= MSMg01no106_m06.b1 MSMg01no106_m06.b1 CHROMAT_FILE:
MSMg01no106_m06.b1 PHD_FILE: MSMg01no106_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:40 2005
(647 letters)
>mm_chr4_19288596_19289642
Length = 1047
Score = 1087 bits (562), Expect = 0.0
Identities = 638/698 (91%), Gaps = 53/698 (7%)
Strand = Plus / Plus
Query: 3 gtgttagagataacactgaaggaagaagctcgtgagaagccccagcccagggccacatgg 62
|||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||
Sbjct: 203 gtgttagagataacactgaaggaagaagcttgagagaagccccagcccagggtcacgtgg 262
Query: 63 cacggtgaggggcatagccctcctgagatagccctaaacacccagaggacagggtaccac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacggtgaggggcatagccctcctgagatagccctaaacacccagaggacagggtaccac 322
Query: 123 taaaatgagcaagtatgtggcagagagatggaaaggaatgagaagcagaagaatgtacga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaaatgagcaagtatgtggcagagagatggaaaggaatgagaagcagaagaatgtacga 382
Query: 183 ataatgaaaagaggtgactacaccacctaagaccaccatgagattctggctttatagcta 242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 ataatgaaaagaggtgactacaccacctaagaccactatgagattctggctttatagcta 442
Query: 243 ccaagggccaagtctgggtccatggccctgcagcagtgggggtctgttaccaccaaaggc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccaagggccaagtctgggtccatggccctgcagcagtgggggtctgttaccaccaaaggc 502
Query: 303 cagactgcctggggccatgttaatgtctgaaggctattcagagctagccctgccccttgc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagactgcctggggccatgttaatgtctgaaggctattcagagctagccctgccccttgc 562
Query: 363 ccaagcatcctgagacagcaggccctgaagaagtgagagcatgagtgttggccctgccac 422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 563 ccaagcatcctgagacagcaggccctgaagaagtgagagcatgagtgctggccctgccac 622
Query: 423 ttgcctgctctgaagtggcaagggcactgggagatgcaatctccacttgaagcactgcaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 ttgcctgctctgaagtggcaagggcactgggagatgcaatctccacttgaaacactgcaa 682
Query: 483 aaagctatccctgggggtcatgatagctggagaactattactgaccctcacaggctgaag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaagctatccctgggggtcatgatagctggagaactattactgaccctcacaggctgaag 742
Query: 543 cacttaggatatcaagaactcggaaaaaaaaaaaa------------------------- 577
|||||||||||||||||||||||||||||||||||
Sbjct: 743 cacttaggatatcaagaactcggaaaaaaaaaaaaacaaaacaaacaaacaaacaaacaa 802
Query: 578 ----------------------------ctgcaccttgcctgggcagtacaatagaactg 609
||||||||||||||||||||||||||||||||
Sbjct: 803 acaaaaaccaaaacaaaacaaaaaaaaactgcaccttgcctgggcagtacaatagaactg 862
Query: 610 gtcctggtagcaaaggtgaaggtgagctgcctcaaagg 647
||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gtcctggtagcaaaggtgaaggtgagctgcctcaaagg 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_m06.g1 MSMg01no106_m06.g1 CHROMAT_FILE:
MSMg01no106_m06.g1 PHD_FILE: MSMg01no106_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:40 2005
(663 letters)
>mm_chr4_19419942_19421005
Length = 1064
Score = 1183 bits (612), Expect = 0.0
Identities = 651/664 (98%), Gaps = 1/664 (0%)
Strand = Plus / Minus
Query: 1 gccaggaatgcaaagtgagacctgtctcaataaccaactaaatacatacaaacatatttt 60
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 702 gccaggaatgcaaagtgagacctgtctcaataaataactacatacatacaaacatatttt 643
Query: 61 atgattaccagtaaatatttgatttttatacttattttctatacctacagatatttggtg 120
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 642 atgattaccagtaaatattttatttttatacttattttgtatacctacagatatttggtg 583
Query: 121 atgaaaaaa-gtcacaggctaaagggtaaaataaagtgtaagaagtcttggcatatatgt 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 atgaaaaaatgtcacaggctaaagggtaaaataaagtgtaagaagtcttggcatatatgt 523
Query: 180 tgttcatatgtatgtgtgtacaagtatttttttcagtaagtgctataatatgcaaatagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgttcatatgtatgtgtgtacaagtatttttttcagtaagtgctataatatgcaaatagt 463
Query: 240 ctctagttacttatttcaagctttgcatcagggctgctataaatgaaattacaaattgag 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 462 ctctagttacttatttcaagctttgcatcagggctgctatacatgaaattacaaattgag 403
Query: 300 tgctaaacaaagtaaagtatagttggagaccccagaatttgtacagtgtacagcctactc 359
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgctaaacaaagtacagtgtagttggagaccccagaatttgtacagtgtacagcctactc 343
Query: 360 agctctctctagcagaatctctatatttaggagcactcaaaggggacaatagactacaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agctctctctagcagaatctctatatttaggagcactcaaaggggacaatagactacaga 283
Query: 420 agagcagacactaaatgtagaaacataaggaaagcactcggaacataagtgaaatttatt 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 282 agagcagacactaaatgtagaaacataaggaaagcactcggaacataagcgaaatttatt 223
Query: 480 gaaaatttaaactttgctacagtttttttaaaaaattcacattaaatcatttatactata 539
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 222 gaaaatttaaactttggtacagttttttaaaaaaattcacattaaatcatttatactata 163
Query: 540 ataatattttttgaagataggcagagctatctcctaaaggaattaataaaaaggctaccc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ataatattttttgaagataggcagagctatctcctaaaggaattaataaaaaggctaccc 103
Query: 600 tgtgaaatgatgaaagacagaaaccatattctctgagttggtagaaggacaagtgtagaa 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tgtgaaatgatgaaagaaagaaaccatattctctgagttggtagaaggacaagtgtagaa 43
Query: 660 taga 663
||||
Sbjct: 42 taga 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
